Gene: BcaB05g22429
General Information
Structural Information
- Species Brassica carinata
- Gene Identifier BcaB05g22429
- Transcript Identifier BcaB05g22429
- Gene Type Coding gene
- Location ChrB05 : 7799830-7801026 : positive
Gene Family Information
- ID HOM05D001072
- #Genes/#Species 571/100
- Phylogenetic origin
- ID ORTHO05D001945
- #Genes/#Species 334/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G07090 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G07090 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT5G07090 |
| GO:0022627 | ISO | PLAZA Integrative Orthology | cytosolic small ribosomal subunit | AT2G17360 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G17360 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT5G07090 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G58420 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT2G17360 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005824 | KOW |
| IPR013843 | Ribosomal protein S4e, N-terminal |
| IPR041982 | Ribosomal protein S4, KOW domain |
| IPR013845 | Ribosomal protein S4e, central region |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR002942 | RNA-binding S4 domain |
| IPR032277 | 40S ribosomal protein S4, C-terminal domain |
| IPR000876 | Ribosomal protein S4e |
| IPR036986 | RNA-binding S4 domain superfamily |
| IPR038237 | Ribosomal protein S4e, central domain superfamily |
| Mapman id | Description |
|---|---|
| 17.1.3.1.5 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS4 |