Gene: Ah.11g046930

General Information

Structural Information

  • Species Amaranthus hybridus
  • Gene Identifier Ah.11g046930
  • Transcript Identifier Ah.11g046930-v1.1.a1
  • Gene Type Coding gene
  • Location AmaHy_arrow1_Scaffold_11 : 16620583-16629200 : negative

Gene Family Information

  • ID HOM05D001972
  • #Genes/#Species 335/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Ah.11g046930-v1.1.a1

Descriptions

  • Description E3 ubiquitin-protein ligase ORTHRUS 2 (EC 2.3.2.27) (Protein VARIANT IN METHYLATION 1) (RING-type E3 ubiquitin transferase ORTHRUS 2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032776
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine AT1G57820
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT4G08590
GO:0090309
ISO
PLAZA Integrative Orthologypositive regulation of DNA methylation-dependent heterochromatin assembly AT1G57820
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G39550
GO:0010424
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequence AT1G57820
GO:0031508
ISO
PLAZA Integrative Orthologypericentric heterochromatin assembly AT1G57820
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT1G57820
GO:0006325
ISO
PLAZA Integrative Orthologychromatin organization AT1G57820

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT1G57820
GO:0010429
ISO
PLAZA Integrative Orthologymethyl-CpNpN binding AT1G57820
GO:0010385
ISO
PLAZA Integrative Orthologydouble-stranded methylated DNA binding AT1G57820
GO:0010428
ISO
PLAZA Integrative Orthologymethyl-CpNpG binding AT1G57820
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT4G08590
GO:0008327
ISO
PLAZA Integrative Orthologymethyl-CpG binding AT1G57820
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT1G57820

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010369
ISO
PLAZA Integrative Orthologychromocenter AT1G57820
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G08590
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G57820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR003105 SRA-YDG
IPR015947 PUA-like superfamily
IPR011011 Zinc finger, FYVE/PHD-type
IPR027370 RING-type zinc-finger, LisH dimerisation motif
IPR001965 Zinc finger, PHD-type
IPR036987 SRA-YDG superfamily
IPR001841 Zinc finger, RING-type
IPR045134 UHRF1/2-like
Mapman id Description
12.5.2.3 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.regulatory cofactor (ORTH/VIM)