Gene: ATR1125G118
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR1125G118
- Transcript Identifier ATR1125G118.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00079 : 261362-263388 : negative
Gene Family Information
- ID HOM05D000595
- #Genes/#Species 943/100
- Phylogenetic origin
- ID ORTHO05D001274
- #Genes/#Species 442/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00079.8.v1.0
- pacid 31564343
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0045493 | ISO | PLAZA Integrative Orthology | xylan catabolic process | AT1G68560 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT1G68560 |
| GO:0010411 | ISO | PLAZA Integrative Orthology | xyloglucan metabolic process | AT1G68560 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds | |
| GO:0003824 | ISO | PLAZA Homology (enrichment) | catalytic activity | HOM05D000595 |
| GO:0009044 | ISO | PLAZA Integrative Orthology | xylan 1,4-beta-xylosidase activity | AT1G68560 |
| GO:0080176 | ISO | PLAZA Integrative Orthology | xyloglucan 1,6-alpha-xylosidase activity | AT1G68560 |
| GO:0046556 | ISO | PLAZA Integrative Orthology | alpha-L-arabinofuranosidase activity | AT1G68560 |
| GO:0030246 | ISO | PLAZA Homology (enrichment) | carbohydrate binding | HOM05D000595 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G45940 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT1G68560 |
| GO:0048046 | ISO | PLAZA Integrative Orthology | apoplast | AT1G68560 |
| GO:0009505 | ISO | PLAZA Integrative Orthology | plant-type cell wall | AT1G68560 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 21.2.1.2.5 | Cell wall organisation.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase |