Gene: ATR1098G047

General Information

Structural Information

  • Species Amborella trichopoda
  • Gene Identifier ATR1098G047
  • Transcript Identifier ATR1098G047.1
  • Gene Type Coding gene
  • Location AmTr_v1.0_scaffold00092 : 1735204-1744932 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id evm_27.TU.AmTr_v1.0_scaffold00092.91.v1.0
  • pacid 31552042

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc12g006320.3
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing AT3G22330
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G22310
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G22310
GO:0039694
ISO
PLAZA Integrative Orthologyviral RNA genome replication AT3G22310
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G22310

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G22330
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT3G22310
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT3G22310
GO:0005524
IEA
InterProATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT3G22310
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT3G22330
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G22330
GO:0019034
ISO
PLAZA Integrative Orthologyviral replication complex AT3G22310
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G22310
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G22330

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.11.4.2.1.4 RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.RNA helicase (PMH)