Gene: ATR0680G259
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0680G259
- Transcript Identifier ATR0680G259.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00009 : 8009241-8011491 : negative
Gene Family Information
- ID HOM05D003145
- #Genes/#Species 218/99
- Phylogenetic origin
- ID ORTHO05D003586
- #Genes/#Species 214/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00009.349.v1.0
- pacid 31568926
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0045131 | IEA | InterPro | pre-mRNA branch point binding | |
| GO:0008270 | ISO | PLAZA Homology (enrichment) | zinc ion binding | HOM05D003145 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR045071 | KH domain-containing BBP-like |
| IPR035979 | RNA-binding domain superfamily |
| IPR004087 | K Homology domain |
| IPR000504 | RNA recognition motif domain |
| IPR036612 | K Homology domain, type 1 superfamily |
| IPR004088 | K Homology domain, type 1 |
| IPR031150 | BBP/SF1 family |
| IPR032570 | Splicing factor 1, helix-hairpin domain |
| Mapman id | Description |
|---|---|
| 16.2.1.2.9 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SF1) |