Gene: ATR0580G058
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0580G058
- Transcript Identifier ATR0580G058.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00019 : 535676-538343 : positive
Gene Family Information
- ID HOM05D000037
- #Genes/#Species 5045/97
- Phylogenetic origin
- ID ORTHO05D000150
- #Genes/#Species 1654/91
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00019.32.v1.0
- pacid 31572213
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0010098 | ISO | PLAZA Integrative Orthology | suspensor development | AT2G33160 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT2G33160 |
| GO:0080159 | ISO | PLAZA Integrative Orthology | zygote elongation | AT2G33160 |
| GO:0009834 | ISO | PLAZA Integrative Orthology | plant-type secondary cell wall biogenesis | AT1G78400 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004650 | IEA | InterPro | polygalacturonase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT2G33160 |
| GO:0009505 | ISO | PLAZA Integrative Orthology | plant-type cell wall | AT1G78400 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 21.3.5.3 | Cell wall organisation.pectin.modification and degradation.pectin lyase |