Gene: AT5G60540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60540
  • Transcript Identifier AT5G60540.1
  • Gene Type Coding gene
  • Location Chr5 : 24336874-24338647 : negative

Gene Family Information

  • ID HOM05D005643
  • #Genes/#Species 137/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60540.1
  • symbol PDX2
  • Alias ATPDX2,PYRIDOXINE BIOSYNTHESIS 2,EMB2407,EMBRYO DEFECTIVE 2407
  • uniprot Q8LAD0

Descriptions

  • Description pyridoxine biosynthesis 2
  • Computational description pyridoxine biosynthesis 2 (PDX2); CONTAINS InterPro DOMAIN/s: PdxT/SNO family, conserved site (InterPro:IPR021196), SNO glutamine amidotransferase (InterPro:IPR002161); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008614
IBA
Gene Ontologypyridoxine metabolic process1
GO:0042823
IBA
IEA
Gene Ontologypyridoxal phosphate biosynthetic process1
GO:0042823
IEA
InterPropyridoxal phosphate biosynthetic process
GO:0042819
IEA
GOA Databasevitamin B6 biosynthetic process
GO:0042819
IMP, IGI
Gene Ontologyvitamin B6 biosynthetic process2
GO:0042819
IEA
InterProvitamin B6 biosynthetic process
GO:0006541
IEA
GOA Databaseglutamine metabolic process
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004359
IEA
GOA Databaseglutaminase activity
GO:0004359
IDA
ISS
Gene Ontologyglutaminase activity2 3
GO:0004359
IEA
InterProglutaminase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0046982
IPI
Gene Ontologyprotein heterodimerization activity4
GO:0036381
IEA
Gene Ontologypyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA
IBA
Gene Ontologycytosol1 2
GO:1903600
IBA
Gene Ontologyglutaminase complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029062 Class I glutamine amidotransferase-like
IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO
Mapman id Description
7.7.1.2 Coenzyme metabolism.pyridoxalphosphate biosynthesis.pyridoxal 5'-phosphate synthase complex.glutaminase component