Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 2.6e-141 505.4 256 100.0
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 1.4e-139 499.6 256 98.4
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 4.1e-134 481.5 256 95.7
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.4e-129 466.5 256 91.8
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 3.9e-129 464.9 256 93.8
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 5.1e-129 464.5 256 92.2
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.5e-128 463.0 256 91.8
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 4.3e-128 461.5 256 92.2
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 4.3e-128 461.5 256 92.2
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 5.7e-128 461.1 256 92.2
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.1e-123 446.8 255 89.8
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 1.4e-121 439.9 256 88.3
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 4.4e-120 434.9 256 86.7
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 6.3e-119 431.0 251 88.0
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 6.5e-116 421.0 240 90.0
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 4.7e-114 414.8 260 80.8
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.2e-111 406.0 257 80.2
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 6.3e-111 404.4 255 78.4
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 8.2e-111 404.1 255 78.0
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 2.4e-110 402.5 255 77.6
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 9.1e-110 400.6 256 79.3
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.7e-108 396.4 255 77.3
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 4.7e-106 388.3 254 76.8
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 6.1e-106 387.9 257 77.8
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.0e-105 385.6 227 83.3
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 2.6e-104 382.5 254 75.2
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 3.3e-104 382.1 256 75.4
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 5.7e-104 381.3 252 75.8
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 5.7e-104 381.3 252 75.8
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 9.7e-104 380.6 256 74.6
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.7e-103 379.8 256 74.6
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 2.2e-103 379.4 254 76.4
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.2e-103 379.4 257 73.5
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.4e-102 376.7 256 75.0
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.8e-102 376.3 254 73.2
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 3.1e-102 375.6 258 71.7
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 4.1e-102 375.2 255 73.7
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 4.1e-102 375.2 259 73.0
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 5.3e-102 374.8 254 74.0
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 9.1e-102 374.0 254 74.4
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 1.2e-101 373.6 253 74.7
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.6e-101 373.2 254 73.6
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 2.7e-101 372.5 255 74.5
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 4.5e-101 371.7 254 73.2
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 5.9e-101 371.3 256 75.8
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.0e-100 370.5 256 73.8
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 5.0e-100 368.2 256 73.4
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 8.5e-100 367.5 252 75.0
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 7.2e-99 364.4 253 73.1
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 9.4e-99 364.0 252 73.0
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.6e-98 363.2 257 73.5
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.7e-98 362.5 256 71.9
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 3.6e-98 362.1 272 70.2
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 3.6e-98 362.1 254 72.0
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 4.7e-98 361.7 256 71.1
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 6.1e-98 361.3 257 71.2
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 8.0e-98 360.9 205 89.3
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 1.4e-97 360.1 257 73.5
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 3.0e-97 359.0 256 70.7
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 3.0e-97 359.0 253 70.0
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 3.0e-97 359.0 255 70.2
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 6.8e-97 357.8 254 71.7
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 6.8e-97 357.8 255 71.0
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.2e-96 357.1 257 69.6
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 1.2e-96 357.1 266 70.3
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 3.4e-96 355.5 258 72.5
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 3.4e-96 355.5 258 69.8
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 5.7e-96 354.8 258 69.8
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 5.7e-96 354.8 258 69.8
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 5.7e-96 354.8 255 69.8
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 7.5e-96 354.4 253 70.8
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.5e-96 354.4 270 70.0
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 9.8e-96 354.0 257 72.4
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 9.8e-96 354.0 256 69.9
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 2.2e-95 352.8 252 71.0
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 2.2e-95 352.8 256 71.1
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.2e-95 352.8 253 70.4
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 4.8e-95 351.7 256 70.3
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 4.1e-94 348.6 258 70.2
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 4.1e-94 348.6 256 70.3
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 5.4e-94 348.2 257 70.4
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.2e-93 347.1 257 68.5
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.6e-93 346.7 304 61.8
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.6e-93 346.7 258 68.6
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 2.7e-93 345.9 241 71.4
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 4.5e-93 345.1 241 69.3
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 5.0e-92 341.7 254 67.7
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.3e-91 339.0 280 63.6
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 6.1e-90 334.7 254 66.1
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 5.2e-89 331.6 256 63.3
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.2e-88 330.5 260 64.2
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 1.5e-88 330.1 264 64.8
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.4e-88 328.6 260 64.2
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.3e-87 327.0 236 71.6
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 6.3e-87 324.7 256 66.4
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.4e-86 322.8 240 67.9
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 4.5e-85 318.5 262 62.2
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 5.0e-84 315.1 256 69.5
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 3.3e-83 312.4 240 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 9.5e-83 310.8 256 61.3
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 7.5e-80 301.2 255 61.2
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 8.3e-79 297.7 255 59.6
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 4.1e-78 295.4 230 63.0
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 6.0e-77 291.6 201 71.6
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.8e-77 291.2 199 71.9
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 1.0e-76 290.8 255 59.2
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.3e-76 290.4 207 71.0
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 1.4e-73 280.4 260 60.4
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 1.7e-71 273.5 164 78.7
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 4.9e-71 271.9 238 61.3
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 2.7e-69 266.2 187 70.1
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 8.6e-68 261.2 176 73.9
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 3.3e-67 259.2 198 65.7
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 1.4e-65 253.8 243 53.9
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 4.9e-63 245.4 253 53.0
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 6.4e-63 245.0 131 91.6
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 4.6e-61 238.8 253 51.4
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.2e-58 230.7 221 57.0
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.8e-57 226.9 253 50.6
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 4.7e-50 202.2 115 83.5
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.7e-44 183.7 101 80.2
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 3.0e-44 183.0 145 67.6
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 4.8e-42 175.6 153 59.5
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 6.9e-41 171.8 144 66.0
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.2e-40 171.0 262 39.7
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 4.9e-31 139.0 68 95.6
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 6.7e-28 128.6 117 53.8
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.5e-27 127.5 93 65.6
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 1.9e-22 110.5 57 86.0
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 5.7e-19 99.0 72 62.5
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 9.0e-17 91.7 78 62.8
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.2e-16 91.3 79 62.0
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 2.6e-16 90.1 72 69.4
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 9.4e-14 81.6 73 60.3
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 3.6e-13 79.7 72 61.1
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 3.3e-11 73.2 60 68.3
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 3.7e-10 69.7 63 55.6
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.1e-06 58.2 68 48.5
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 3.2e-06 56.6 145 32.4


User provided reference genes

Program Settings