Gene: AT5G59890
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G59890
- Transcript Identifier AT5G59890.1
- Gene Type Coding gene
- Location Chr5 : 24122545-24123596 : positive
Gene Family Information
- ID HOM05D000368
- #Genes/#Species 1307/100
- Phylogenetic origin
- ID ORTHO05D000289
- #Genes/#Species 1191/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G59890.1
- symbol ADF4
- Alias ATADF4
- uniprot Q9ZSK3
Descriptions
- Description actin depolymerizing factor 4
- Computational description actin depolymerizing factor 4 (ADF4); FUNCTIONS IN: actin binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 1 (TAIR:AT3G46010.1); Has 1469 Blast hits to 1466 proteins in 267 species: Archae - 0; Bacteria - 5; Metazoa - 601; Fungi - 174; Plants - 513; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030042 | IEA | GOA Database | actin filament depolymerization | |
| GO:0030042 | IDA IBA | Gene Ontology | actin filament depolymerization | 1 2 |
| GO:0030042 | IEA | InterPro | actin filament depolymerization | |
| GO:0006952 | IEA | GOA Database | defense response | |
| GO:0042742 | IMP | Gene Ontology | defense response to bacterium | 3 |
| GO:0002758 | IMP | Gene Ontology | innate immune response-activating signal transduction | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051015 | IBA | Gene Ontology | actin filament binding | 1 |
| GO:0003779 | IEA | GOA Database | actin binding | |
| GO:0003779 | IEA | InterPro | actin binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015629 | IEA | GOA Database | actin cytoskeleton | |
| GO:0015629 | IBA | Gene Ontology | actin cytoskeleton | 1 |
| GO:0015629 | IEA | InterPro | actin cytoskeleton | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM, IBA | Gene Ontology | cytoplasm | 1 |
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0009536 | HDA | Gene Ontology | plastid | 4 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 20.2.2.8 | Cytoskeleton organisation.microfilament network.actin polymerisation.actin-depolymerizing factor (ADF) |