Gene: AT5G58050

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G58050
  • Transcript Identifier AT5G58050.1
  • Gene Type Coding gene
  • Location Chr5 : 23494498-23497386 : negative

Gene Family Information

  • ID HOM05D001160
  • #Genes/#Species 532/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G58050.1
  • symbol SVL4
  • Alias GDPDL6,Glycerophosphodiester phosphodiesterase (GDPD) like 6
  • uniprot Q9FGT9

Descriptions

  • Description SHV3-like 4
  • Computational description SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006629
IEA
Gene Ontologylipid metabolic process
GO:0006629
IEA
InterProlipid metabolic process
GO:0006071
IEA
GOA Databaseglycerol metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016301
ISS
Gene Ontologykinase activity
GO:0008889
IEA
GOA Databaseglycerophosphodiester phosphodiesterase activity
GO:0008889
IBA
Gene Ontologyglycerophosphodiester phosphodiesterase activity1
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008081
IEA
GOA Databasephosphoric diester hydrolase activity
GO:0008081
IEA
InterProphosphoric diester hydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0031225
TAS
Gene Ontologyanchored component of membrane2
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR030395 Glycerophosphodiester phosphodiesterase domain
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
Mapman id Description
35.1 not assigned.annotated