Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 5.0e-293 1010.7 660 100.0
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.5e-249 866.3 665 85.9
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 8.3e-224 780.8 674 80.9
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 4.9e-184 648.7 675 70.8
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 1.7e-176 623.6 682 69.8
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 1.2e-174 617.5 677 69.1
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 1.8e-173 613.6 682 67.2
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 2.2e-168 596.7 491 73.1
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 2.0e-164 583.6 673 67.3
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 4.4e-164 582.4 681 68.1
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 7.4e-164 581.6 681 67.8
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 4.6e-105 386.3 699 53.1
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 1.2e-97 361.7 713 50.8
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.2e-75 287.7 484 43.2
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 1.9e-74 284.6 502 40.8
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 9.3e-74 282.3 520 42.9
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 7.9e-73 279.3 482 42.5
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 3.9e-72 276.9 478 42.7
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 1.1e-71 275.4 539 43.0
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 1.8e-69 268.1 511 41.5
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 9.0e-69 265.8 461 43.6
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 7.6e-68 262.7 507 41.4
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.2e-67 261.2 503 41.4
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 3.8e-67 260.4 509 42.0
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 5.5e-66 256.5 497 39.8
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 2.1e-65 254.6 495 41.0
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 7.9e-65 252.7 486 41.6
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 3.0e-64 250.8 452 44.0
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 3.9e-64 250.4 349 49.6
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 3.3e-63 247.3 524 40.6
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 7.4e-63 246.1 507 40.8
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 7.4e-63 246.1 522 38.5
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 9.7e-63 245.7 515 38.8
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 9.7e-63 245.7 513 40.2
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 9.7e-63 245.7 522 38.9
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.8e-62 244.2 497 41.6
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 1.4e-61 241.9 510 40.0
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 6.9e-61 239.6 514 39.5
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.2e-60 238.8 503 40.8
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 1.5e-60 238.4 465 40.4
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 5.9e-60 236.5 536 37.7
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 5.9e-60 236.5 539 38.0
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 7.7e-60 236.1 503 40.8
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.3e-59 235.3 536 39.9
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 1.7e-59 235.0 536 39.9
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 5.0e-59 233.4 505 40.0
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 8.5e-59 232.6 518 39.4
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 1.9e-58 231.5 465 40.9
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 7.2e-58 229.6 502 40.0
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 1.2e-57 228.8 517 39.3
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.2e-57 228.8 502 40.6
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 2.1e-57 228.0 531 37.9
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 3.6e-57 227.3 477 40.0
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 4.6e-57 226.9 524 38.5
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 6.1e-57 226.5 486 40.5
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 6.1e-57 226.5 511 39.1
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 1.4e-56 225.3 504 40.5
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 6.7e-56 223.0 497 39.0
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 1.1e-55 222.2 473 38.7
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 4.3e-55 220.3 449 40.1
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 5.7e-55 219.9 455 40.2
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 2.8e-54 217.6 366 42.6
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.4e-53 215.3 554 36.5
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 4.1e-53 213.8 543 36.6
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 9.1e-53 212.6 572 36.4
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 4.5e-52 210.3 492 35.2
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 7.7e-52 209.5 476 38.2
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 7.7e-52 209.5 521 38.6
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 1.3e-51 208.8 492 36.8
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 9.4e-50 202.6 518 36.5
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.6e-49 201.8 535 37.0
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 1.0e-48 199.1 499 36.3
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.4e-48 198.7 479 36.5
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 1.8e-48 198.4 540 37.0
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 5.1e-48 196.8 537 37.1
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 8.8e-48 196.1 309 44.0
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 2.6e-47 194.5 533 36.4
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 5.7e-47 193.4 543 34.8
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.2e-44 185.7 489 36.4
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.2e-44 185.7 464 36.6
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.6e-44 184.5 380 39.2
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 7.7e-44 183.0 550 35.6
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 4.7e-41 173.7 519 34.1
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 8.0e-41 172.9 533 34.5
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 3.9e-40 170.6 515 34.6
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 8.8e-40 169.5 339 41.0
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 4.4e-39 167.2 510 34.1
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 4.8e-38 163.7 588 30.1
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 7.7e-36 156.4 444 35.8
BcaB08g35874 Brassica carinata HOM05D006512 ORTHO05D008027 1.7e-35 155.2 390 41.8
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 3.8e-35 154.1 526 33.8
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 3.8e-35 154.1 558 31.0
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 8.0e-33 146.4 553 31.5
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 7.5e-31 139.8 461 31.2
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 2.4e-29 134.8 543 32.2
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 5.9e-28 130.2 580 29.8
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 6.8e-24 116.7 534 28.5
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 7.5e-23 113.2 215 40.0
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 3.5e-20 104.4 224 36.2
BcaC01g06346 Brassica carinata HOM05D006512 ORTHO05D008027 4.5e-20 104.0 78 67.9
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 1.8e-13 82.0 641 24.2
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 3.5e-12 77.8 245 29.4
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 8.0e-09 66.6 152 40.1
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 1.5e-07 62.4 128 38.3
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 2.2e-06 58.5 117 28.2
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 3.7e-06 57.8 91 33.0


User provided reference genes

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