Gene: AT5G54990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54990
  • Transcript Identifier AT5G54990.1
  • Gene Type Coding gene
  • Location Chr5 : 22317505-22318185 : positive

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54990.1
  • uniprot Q9FFT1

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G18110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006623
IBA
Gene Ontologyprotein targeting to vacuole1
GO:0006896
IBA
Gene OntologyGolgi to vacuole transport1
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
HDA
Gene Ontologycytosol2
GO:0017119
IBA
Gene OntologyGolgi transport complex1
GO:0005768
IBA
Gene Ontologyendosome1
GO:0016020
IBA
Gene Ontologymembrane1
GO:0005802
IBA
Gene Ontologytrans-Golgi network1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001841 Zinc finger, RING-type
IPR011016 Zinc finger, RING-CH-type
Mapman id Description
35.1 not assigned.annotated