Gene: AT5G53490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G53490
  • Transcript Identifier AT5G53490.4
  • Gene Type Coding gene
  • Location Chr5 : 21723488-21724690 : negative

Gene Family Information

  • ID HOM05D005832
  • #Genes/#Species 134/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G53490.4
  • uniprot P81760

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Pentapeptide repeat-containing protein (TAIR:AT1G12250.2); Has 2348 Blast hits to 1825 proteins in 378 species: Archae - 42; Bacteria - 1727; Metazoa - 7; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0009543
IEA
GOA Databasechloroplast thylakoid lumen
GO:0009543
HDA
Gene Ontologychloroplast thylakoid lumen2
GO:0031977
HDA
Gene Ontologythylakoid lumen2
GO:0009579
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid3
GO:0009535
HDA
Gene Ontologychloroplast thylakoid membrane4
GO:0009570
HDA
Gene Ontologychloroplast stroma5
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast6
GO:0009534
HDA
Gene Ontologychloroplast thylakoid7
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001646 Pentapeptide repeat
IPR044195 Pentapeptide repeat containing protein TL17-like
Mapman id Description
35.1 not assigned.annotated