Gene: AT5G49980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G49980
  • Transcript Identifier AT5G49980.1
  • Gene Type Coding gene
  • Location Chr5 : 20334420-20336531 : negative

Gene Family Information

  • ID HOM05D000530
  • #Genes/#Species 1029/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G49980.1
  • symbol AFB5
  • uniprot Q9LTX2

Descriptions

  • Description auxin F-box protein 5
  • Computational description auxin F-box protein 5 (AFB5); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G24390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0009734
ISS
Gene Ontologyauxin-activated signaling pathway
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0031146
IBA
Gene OntologySCF-dependent proteasomal ubiquitin-dependent protein catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000822
ISS
Gene Ontologyinositol hexakisphosphate binding
GO:0010011
ISS
Gene Ontologyauxin binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0019005
ISS, IBA
Gene OntologySCF ubiquitin ligase complex1
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041567 COI1, F-box
IPR036047 F-box-like domain superfamily
IPR006553 Leucine-rich repeat, cysteine-containing subtype
IPR041101 Transport inhibitor response 1 domain
IPR032675 Leucine-rich repeat domain superfamily
Mapman id Description
11.2.2.1 Phytohormone action.auxin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (TIR1/AFB)