Gene: AT5G42990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G42990
  • Transcript Identifier AT5G42990.1
  • Gene Type Coding gene
  • Location Chr5 : 17244206-17245904 : negative

Gene Family Information

  • ID HOM05D001587
  • #Genes/#Species 405/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G42990.1
  • symbol UBC18
  • uniprot Q9FMM0

Descriptions

  • Description ubiquitin-conjugating enzyme 18
  • Computational description ubiquitin-conjugating enzyme 18 (UBC18); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT1G45050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0043161
IBA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process2
GO:0000209
IBA
Gene Ontologyprotein polyubiquitination2
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0061631
IEA
GOA Databaseubiquitin conjugating enzyme activity
GO:0061631
IBA
Gene Ontologyubiquitin conjugating enzyme activity2
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005524
IEA
GOA DatabaseATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000608 Ubiquitin-conjugating enzyme E2
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
Mapman id Description
19.2.2.1.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-conjugating E2 protein (UBC)