Gene: AT5G42630

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G42630
  • Transcript Identifier AT5G42630.1
  • Gene Type Coding gene
  • Location Chr5 : 17073997-17075747 : negative

Gene Family Information

  • ID HOM05D000317
  • #Genes/#Species 1458/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G42630.1
  • symbol ATS
  • Alias KAN4,KANADI 4
  • full_name ABERRANT TESTA SHAPE
  • uniprot Q9FJV5

Descriptions

  • Description Homeodomain-like superfamily protein
  • Computational description ABERRANT TESTA SHAPE (ATS); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G16560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IMP
IBA
TAS
Gene Ontologyregulation of transcription, DNA-templated1 2 3
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0010158
IEA
Gene Ontologyabaxial cell fate specification
GO:0010158
IEA
InterProabaxial cell fate specification
GO:0030154
IEA
GOA Databasecell differentiation
GO:0080060
IMP, IGI
Gene Ontologyintegument development4 5
GO:0048481
IMP
Gene Ontologyplant ovule development6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000976
IEA
GOA Databasetranscription cis-regulatory region binding
GO:0000976
IDA
IBA
Gene Ontologytranscription cis-regulatory region binding2 3
GO:0000976
IEA
InterProtranscription cis-regulatory region binding
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
IBA
Gene Ontologynucleus2 3
GO:0005618
IDA
Gene Ontologycell wall7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017930 Myb domain
IPR044847 Transcription repressor KANADI
IPR009057 Homeobox-like domain superfamily
IPR006447 Myb domain, plants
Mapman id Description
15.5.2.3 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (GARP)