Gene: AT5G41560
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G41560
- Transcript Identifier AT5G41560.1
- Gene Type Coding gene
- Location Chr5 : 16621427-16622619 : negative
Gene Family Information
- ID HOM05D007428
- #Genes/#Species 104/81
- Phylogenetic origin
- ID ORTHO05D009308
- #Genes/#Species 105/82
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G41560.1
- Alias DDA1,DET1-, DDB1-ASSOCIATED 1
- uniprot Q9FFS4
Descriptions
- Description DET1 complexing ubiquitin ligase
- Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009788 | IMP | Gene Ontology | negative regulation of abscisic acid-activated signaling pathway | 1 |
| GO:0032436 | IMP IBA | Gene Ontology | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 1 2 |
| GO:0032434 | IEA | GOA Database | regulation of proteasomal ubiquitin-dependent protein catabolic process | |
| GO:0032434 | IEA | InterPro | regulation of proteasomal ubiquitin-dependent protein catabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IPI ISM | Gene Ontology | nucleus | 1 |
| GO:0080008 | IBA | Gene Ontology | Cul4-RING E3 ubiquitin ligase complex | 2 |
| GO:0005654 | IEA | GOA Database | nucleoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |