Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 2.9e-51 204.9 102 100.0
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 6.5e-51 203.8 102 99.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 3.0e-48 194.9 102 93.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 8.8e-48 193.4 103 94.2
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 4.4e-47 191.0 102 93.1
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 3.1e-45 184.9 102 91.2
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.2e-43 178.7 102 87.3
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 2.2e-43 178.7 102 87.3
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.2e-43 178.7 102 87.3
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 2.2e-43 178.7 102 87.3
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.1e-42 176.4 96 87.5
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.2e-41 172.9 98 85.7
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.7e-41 171.8 101 82.2
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 8.0e-41 170.2 97 86.6
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 2.9e-35 151.8 93 80.6
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 3.8e-35 151.4 94 76.6
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.1e-34 149.8 96 78.1
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.1e-34 149.8 96 78.1
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 4.2e-34 147.9 95 74.7
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 9.4e-34 146.7 94 76.6
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 2.1e-33 145.6 94 75.5
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.7e-33 145.2 94 76.6
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 6.1e-33 144.1 98 73.5
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 6.1e-33 144.1 94 74.5
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 8.0e-33 143.7 98 70.4
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.3e-32 142.1 94 73.4
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 5.2e-32 141.0 96 69.8
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 5.2e-32 141.0 94 74.5
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 6.8e-32 140.6 96 71.9
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.5e-31 139.4 96 70.8
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 7.5e-31 137.1 94 72.3
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 7.5e-31 137.1 84 76.2
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 7.5e-31 137.1 94 71.3
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.3e-30 136.3 97 68.0
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 1.7e-30 136.0 97 68.0
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 1.7e-30 136.0 97 68.0
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 4.8e-30 134.4 99 65.7
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 6.3e-30 134.0 93 68.8
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 1.8e-29 132.5 97 68.0
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-29 132.5 93 72.0
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 2.4e-29 132.1 96 67.7
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 5.4e-29 131.0 94 70.2
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 9.1e-29 130.2 97 64.9
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.6e-28 129.4 97 64.9
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.6e-28 129.4 93 65.6
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.7e-28 128.6 97 62.9
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 4.5e-28 127.9 70 85.7
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 5.9e-28 127.5 93 64.5
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 5.9e-28 127.5 93 64.5
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 7.7e-28 127.1 97 64.9
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.3e-27 126.3 97 63.9
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.3e-27 126.3 95 61.1
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.3e-27 126.3 99 63.6
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.7e-27 125.9 94 69.1
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 2.9e-27 125.2 98 65.3
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 3.8e-27 124.8 93 66.7
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 3.8e-27 124.8 92 64.1
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-27 124.4 98 64.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-27 124.4 98 64.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-27 124.4 98 64.3
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 5.0e-27 124.4 70 84.3
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.1e-26 123.2 93 65.6
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 2.5e-26 122.1 94 64.9
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 4.2e-26 121.3 99 65.7
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 4.2e-26 121.3 87 66.7
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 4.2e-26 121.3 98 63.3
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 9.5e-26 120.2 99 63.6
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 9.5e-26 120.2 93 64.5
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.2e-25 119.8 93 64.5
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 6.1e-25 117.5 143 47.6
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.4e-24 116.3 95 65.3
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 2.3e-24 115.5 93 61.3
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 3.0e-24 115.2 135 50.4
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 6.8e-24 114.0 96 58.3
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 1.2e-23 113.2 95 60.0
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.5e-23 112.8 90 63.3
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.5e-23 112.8 97 61.9
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.5e-23 112.8 93 59.1
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.0e-23 112.5 96 58.3
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.6e-23 112.1 96 56.2
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 5.7e-23 110.9 98 60.2
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 9.8e-23 110.2 84 61.9
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.8e-22 108.6 80 67.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.8e-22 108.6 98 57.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.9e-22 107.8 88 65.9
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 4.1e-21 104.8 104 54.8
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 3.5e-20 101.7 167 41.9
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 3.5e-20 101.7 88 62.5
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 2.9e-19 98.6 64 73.4
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 3.8e-19 98.2 89 61.8
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.5e-18 95.5 53 84.9
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 7.3e-18 94.0 49 87.8
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 9.5e-18 93.6 95 56.8
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.7e-17 91.3 66 65.2
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.0e-16 90.1 94 55.3
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 5.2e-16 87.8 49 81.6
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.6e-15 85.5 69 60.9
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 7.5e-15 84.0 70 61.4
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 2.9e-14 82.0 69 62.3
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.4e-13 79.7 69 58.0
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.2e-12 76.6 65 63.1
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.5e-12 75.1 49 65.3
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 5.8e-07 57.8 46 60.9
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 1.7e-06 56.2 61 52.5
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 3.7e-06 55.1 45 60.0


User provided reference genes

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