Gene: AT5G41340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G41340
  • Transcript Identifier AT5G41340.2
  • Gene Type Coding gene
  • Location Chr5 : 16538296-16539369 : negative

Gene Family Information

  • ID HOM05D001451
  • #Genes/#Species 435/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G41340.2
  • symbol UBC4
  • Alias ATUBC4,UBIQUITIN CONJUGATING ENZYME 4
  • uniprot P42748

Descriptions

  • Description ubiquitin conjugating enzyme 4
  • Computational description ubiquitin conjugating enzyme 4 (UBC4); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IDA
IBA
TAS
Gene Ontologyubiquitin-dependent protein catabolic process1 2 3
GO:0009408
IDA
Gene Ontologyresponse to heat4
GO:0000209
IBA
Gene Ontologyprotein polyubiquitination3
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IDA
ISS
Gene Ontologyubiquitin-protein transferase activity2 5
GO:0061631
IEA
GOA Databaseubiquitin conjugating enzyme activity
GO:0061631
IBA
Gene Ontologyubiquitin conjugating enzyme activity3
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005524
IEA
GOA DatabaseATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus3
GO:0005829
RCA
Gene Ontologycytosol6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000608 Ubiquitin-conjugating enzyme E2
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
Mapman id Description
19.2.1.3.1.3 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.ubiquitin-conjugating component GID3
19.2.2.1.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-conjugating E2 protein (UBC)