Gene: AT5G40890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40890
  • Transcript Identifier AT5G40890.1
  • Gene Type Coding gene
  • Location Chr5 : 16381645-16384999 : negative

Gene Family Information

  • ID HOM05D000572
  • #Genes/#Species 968/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40890.1
  • symbol CLC-A
  • Alias ATCLC-A,chloride channel A,ATCLCA,CLCA,CHLORIDE CHANNEL A
  • uniprot P92941

Descriptions

  • Description chloride channel A
  • Computational description chloride channel A (CLC-A); CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel ClC-plant (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel B (TAIR:AT3G27170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1902600
IEA
GOA Databaseproton transmembrane transport
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport
GO:0006821
IDA
IEA
Gene Ontologychloride transport1
GO:0006821
IEA
InterProchloride transport
GO:0034765
IEA
GOA Databaseregulation of ion transmembrane transport
GO:0006811
IEA
GOA Databaseion transport
GO:0034220
IEA
GOA Databaseion transmembrane transport
GO:0015706
IDA
Gene Ontologynitrate transport1
GO:0010167
IMP
Gene Ontologyresponse to nitrate2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005247
IEA
Gene Ontologyvoltage-gated chloride channel activity
GO:0005247
IEA
InterProvoltage-gated chloride channel activity
GO:0005244
IEA
GOA Databasevoltage-gated ion channel activity
GO:0005254
IEA
GOA Databasechloride channel activity
GO:0009671
IBA
Gene Ontologynitrate:proton symporter activity3
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0015112
IDA
Gene Ontologynitrate transmembrane transporter activity1
GO:0005253
ISS
Gene Ontologyanion channel activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0034707
IEA
GOA Databasechloride channel complex
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle3
GO:0009705
IBA
Gene Ontologyplant-type vacuole membrane3
GO:0005622
TAS
Gene Ontologyintracellular anatomical structure5
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000644 CBS domain
IPR001807 Chloride channel, voltage gated
IPR014743 Chloride channel, core
IPR002251 Chloride channel ClC-plant
Mapman id Description
24.2.15 Solute transport.carrier-mediated transport.anion channel / anion:proton antiporter (CLC)