Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G39230 Arabidopsis thaliana HOM05D001573 ORTHO05D026805 1.8e-63 245.7 120 100.0
Carub.0007s3669 Capsella rubella HOM05D001573 ORTHO05D026805 4.1e-44 181.4 123 78.0
AL7G51230 Arabidopsis lyrata HOM05D001573 ORTHO05D026805 2.0e-43 179.1 118 80.5
CARHR263180 Cardamine hirsuta HOM05D001573 ORTHO05D026805 5.2e-15 84.7 66 63.6
BcaB04g19510 Brassica carinata HOM05D001573 ORTHO05D001660 8.6e-10 67.4 84 46.4
BcaB07g30080 Brassica carinata HOM05D001573 ORTHO05D001660 1.9e-09 66.2 66 51.5
BcaC04g23841 Brassica carinata HOM05D001573 ORTHO05D001660 2.5e-09 65.9 66 51.5
BolC9t53357H Brassica oleracea HOM05D001573 ORTHO05D001660 2.5e-09 65.9 66 51.5
AL5G19480 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 3.3e-09 65.5 98 41.8
A09p04040 Brassica napus HOM05D001573 ORTHO05D001660 3.3e-09 65.5 66 51.5
C09p04250 Brassica napus HOM05D001573 ORTHO05D001660 3.3e-09 65.5 66 51.5
BraA09t36040Z Brassica rapa HOM05D001573 ORTHO05D001660 3.3e-09 65.5 66 51.5
A06p18230 Brassica napus HOM05D001573 ORTHO05D001660 4.2e-09 65.1 65 52.3
BraA06t24907Z Brassica rapa HOM05D001573 ORTHO05D001660 4.2e-09 65.1 65 52.3
BcaC06g30862 Brassica carinata HOM05D001573 ORTHO05D001660 7.2e-09 64.3 66 51.5
BcaC06g30864 Brassica carinata HOM05D001573 ORTHO05D001660 7.2e-09 64.3 66 51.5
BcaC06g33692 Brassica carinata HOM05D001573 ORTHO05D001660 7.2e-09 64.3 66 51.5
A02p36600 Brassica napus HOM05D001573 ORTHO05D001660 7.2e-09 64.3 67 50.7
C07p38260 Brassica napus HOM05D001573 ORTHO05D001660 7.2e-09 64.3 66 51.5
BolC7t44348H Brassica oleracea HOM05D001573 ORTHO05D001660 7.2e-09 64.3 66 51.5
BraA02t08655Z Brassica rapa HOM05D001573 ORTHO05D001660 7.2e-09 64.3 67 50.7
A06p39890 Brassica napus HOM05D001573 ORTHO05D001660 9.5e-09 63.9 66 51.5
BraA06t26903Z Brassica rapa HOM05D001573 ORTHO05D001660 9.5e-09 63.9 66 51.5
AL5G19560 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 1.2e-08 63.5 116 37.9
BcaC03g17577 Brassica carinata HOM05D001573 ORTHO05D001660 1.6e-08 63.2 37 70.3
BcaC03g17578 Brassica carinata HOM05D001573 ORTHO05D001660 1.6e-08 63.2 37 70.3
C02p55580 Brassica napus HOM05D001573 ORTHO05D001660 1.6e-08 63.2 37 70.3
BolC2t11614H Brassica oleracea HOM05D001573 ORTHO05D001660 1.6e-08 63.2 37 70.3
Carub.0005s0811 Capsella rubella HOM05D001573 ORTHO05D001660 2.8e-08 62.4 118 39.0
AT3G29380 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 1.4e-07 60.1 88 43.2
Sp2g17970 Schrenkiella parvula HOM05D001573 ORTHO05D001660 1.4e-07 60.1 66 48.5
COL.COLO4_02773 Corchorus olitorius HOM05D001573 ORTHO05D001660 1.8e-07 59.7 82 36.6
COL.COLO4_07019 Corchorus olitorius HOM05D001573 ORTHO05D001660 1.8e-07 59.7 82 36.6
COL.COLO4_10355 Corchorus olitorius HOM05D001573 ORTHO05D001660 1.8e-07 59.7 82 36.6
Mapoly2273s0001 Marchantia polymorpha HOM05D001573 ORTHO05D001660 3.0e-07 58.9 41 61.0
Lj1g0015649 Lotus japonicus HOM05D001573 ORTHO05D001660 5.2e-07 58.2 36 61.1
MD09G1065600 Malus domestica HOM05D001573 ORTHO05D001660 8.9e-07 57.4 64 46.9
MD09G1065500 Malus domestica HOM05D001573 ORTHO05D001660 2.0e-06 56.2 64 46.9
PSO017G1640 Papaver somniferum HOM05D001573 ORTHO05D001660 2.0e-06 56.2 69 40.6
Prupe.3G255700 Prunus persica HOM05D001573 ORTHO05D001660 2.6e-06 55.8 33 66.7
Atru.chr12.2349 Acer truncatum HOM05D001573 ORTHO05D001660 3.4e-06 55.5 79 38.0
Mapoly0052s0001 Marchantia polymorpha HOM05D001573 ORTHO05D001660 3.4e-06 55.5 41 58.5
PSO017G6238 Papaver somniferum HOM05D001573 ORTHO05D001660 3.4e-06 55.5 60 41.7
Phvul.001G130000 Phaseolus vulgaris HOM05D001573 ORTHO05D001660 3.4e-06 55.5 38 52.6
AL4G39730 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
AT2G41630 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
EL10Ac8g19948 Beta vulgaris HOM05D001573 ORTHO05D001660 4.4e-06 55.1 38 57.9
BcaNung04066 Brassica carinata HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
A05p02370 Brassica napus HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
C04p02810 Brassica napus HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
BolC4t21921H Brassica oleracea HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
BraA05t19231Z Brassica rapa HOM05D001573 ORTHO05D001660 4.4e-06 55.1 62 41.9
Prupe.3G255800 Prunus persica HOM05D001573 ORTHO05D001660 4.4e-06 55.1 78 39.7
Atru.chr12.2339 Acer truncatum HOM05D001573 ORTHO05D001660 5.7e-06 54.7 79 36.7
Medtr1g053065 Medicago truncatula HOM05D001573 ORTHO05D001660 5.7e-06 54.7 80 32.5
VMungo1383G1281 Vigna mungo HOM05D001573 ORTHO05D001660 5.7e-06 54.7 38 52.6
Ah.04g151540 Amaranthus hybridus HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
Ah.13g076530 Amaranthus hybridus HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
Cpa.g.sc182.4 Carica papaya HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
Oeu023122.2 Olea europaea HOM05D001573 ORTHO05D001660 7.5e-06 54.3 35 57.1
Phvul.007G251400 Phaseolus vulgaris HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
VMungo0720G0356 Vigna mungo HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
GSVIVG01029415001 Vitis vinifera HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
GSVIVG01033246001 Vitis vinifera HOM05D001573 ORTHO05D001660 7.5e-06 54.3 33 60.6
EL10Ac3g07112 Beta vulgaris HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
BcaB01g03461 Brassica carinata HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 40.3
BcaC01g05328 Brassica carinata HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 40.3
A03p23330 Brassica napus HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 40.3
A03p36480 Brassica napus HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
C03p27860 Brassica napus HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 40.3
C03p44080 Brassica napus HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
BolC3t15156H Brassica oleracea HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 40.3
BolC3t16683H Brassica oleracea HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
BraA03t11551Z Brassica rapa HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 40.3
BraA03t12815Z Brassica rapa HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
Carub.0004s2388 Capsella rubella HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 41.9
CARHR136720 Cardamine hirsuta HOM05D001573 ORTHO05D001660 9.8e-06 53.9 62 41.9
AUR62024476 Chenopodium quinoa HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
AUR62026065 Chenopodium quinoa HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
Ciclev10005479m.g Citrus clementina HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
DCAR_003261 Daucus carota HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
Hma1.2p1_1279F.1_g272470 Hydrangea macrophylla HOM05D001573 ORTHO05D001660 9.8e-06 53.9 80 36.2
Lj2A386G76 Lonicera japonica HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
Lju124C45T13 Lonicera japonica HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
Potri.006G048400 Populus trichocarpa HOM05D001573 ORTHO05D001660 9.8e-06 53.9 41 51.2
RcHm_v2.0_Chr2g0165941 Rosa chinensis HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 57.6
Sabra06G0033700 Salix brachista HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6
THA.LOC104824431 Tarenaya hassleriana HOM05D001573 ORTHO05D001660 9.8e-06 53.9 85 37.6
TWI53G1442 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 9.8e-06 53.9 33 60.6


User provided reference genes

Program Settings