Gene: AT5G37560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G37560
  • Transcript Identifier AT5G37560.1
  • Gene Type Coding gene
  • Location Chr5 : 14921986-14923790 : positive

Gene Family Information

  • ID HOM05D000327
  • #Genes/#Species 1418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G37560.1
  • uniprot F4K784

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 7408 Blast hits to 4284 proteins in 281 species: Archae - 7; Bacteria - 615; Metazoa - 2514; Fungi - 1158; Plants - 1001; Viruses - 87; Other Eukaryotes - 2026 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0032436
IBA
Gene Ontologypositive regulation of proteasomal ubiquitin-dependent protein catabolic process1
GO:0000209
IBA
Gene Ontologyprotein polyubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G21420
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0004523
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1
GO:0031624
IBA
Gene Ontologyubiquitin conjugating enzyme binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000151
IBA
Gene Ontologyubiquitin ligase complex1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR002867 IBR domain
IPR002156 Ribonuclease H domain
IPR036397 Ribonuclease H superfamily
IPR031127 E3 ubiquitin ligase RBR family
Mapman id Description
19.2.2.1.4.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)