Gene: AT5G35620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G35620
  • Transcript Identifier AT5G35620.3
  • Gene Type Coding gene
  • Location Chr5 : 13824946-13826331 : negative

Gene Family Information

  • ID HOM05D001274
  • #Genes/#Species 492/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G35620.3
  • symbol LSP1
  • Alias EIF(ISO)4E,EUKARYOTIC INITIATION FACTOR (ISO)4E,EIF4E2,EUKARYOTIC TRANSLATION INITATION FACTOR 4E2,LSP,eIFiso4E,eukaryotic translation Initiation Factor isoform 4E
  • full_name LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1
  • uniprot O04663

Descriptions

  • Description Eukaryotic initiation factor 4E protein
  • Computational description LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1 (LSP1); FUNCTIONS IN: RNA binding, RNA 7-methylguanosine cap binding, translation initiation factor activity; INVOLVED IN: translational initiation, response to virus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E (TAIR:AT4G18040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034059
ISO
PLAZA Integrative Orthologyresponse to anoxia Zm00001eb222060
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006413
TAS
Gene Ontologytranslational initiation
GO:0006413
IEA
InterProtranslational initiation
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0006412
IEA
GOA Databasetranslation
GO:0009615
IMP
Gene Ontologyresponse to virus1
GO:0050687
IMP
Gene Ontologynegative regulation of defense response to virus2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003743
IBA
TAS
Gene Ontologytranslation initiation factor activity2 3
GO:0003743
IEA
InterProtranslation initiation factor activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0000340
IBA
TAS
Gene OntologyRNA 7-methylguanosine cap binding3 4
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016281
IBA
Gene Ontologyeukaryotic translation initiation factor 4F complex3
GO:0005737
IDA
IEA
GOA Databasecytoplasm
GO:0005737
HDA
ISM
TAS
Gene Ontologycytoplasm6
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
HDA
Gene Ontologynucleus6
GO:0005829
IDA
GOA Databasecytosol
GO:0009536
HDA
Gene Ontologyplastid7
GO:0005845
ISS
Gene OntologymRNA cap binding complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001040 Translation Initiation factor eIF- 4e
IPR023398 Translation Initiation factor eIF- 4e-like
Mapman id Description
17.4.2.4.1 Protein biosynthesis.translation initiation.mRNA loading.eIF-iso4F unwinding complex.component eIF-iso4E