Gene: AT5G20730

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G20730
  • Transcript Identifier AT5G20730.2
  • Gene Type Coding gene
  • Location Chr5 : 7016704-7021504 : negative

Gene Family Information

  • ID HOM05D000112
  • #Genes/#Species 3032/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G20730.2
  • symbol NPH4
  • Alias ARF7,AUXIN RESPONSE FACTOR 7,BIP,BIPOSTO,IAA21,indole-3-acetic acid inducible 21,IAA23,indole-3-acetic acid inducible 23,IAA25,indole-3-acetic acid inducible 25,MSG1,MASSUGU 1,TIR5,TRANSPORT INHIBITOR RESPONSE 5
  • full_name NON-PHOTOTROPHIC HYPOCOTYL
  • uniprot P93022

Descriptions

  • Description Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
  • Computational description NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127290 Blast hits to 55954 proteins in 2093 species: Archae - 44; Bacteria - 12651; Metazoa - 44969; Fungi - 11875; Plants - 9571; Viruses - 386; Other Eukaryotes - 47794 (source: NCBI BLink).
  • Computational description NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127440 Blast hits to 56170 proteins in 2083 species: Archae - 44; Bacteria - 12539; Metazoa - 44967; Fungi - 11870; Plants - 9838; Viruses - 384; Other Eukaryotes - 47798 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048527
IGI
Gene Ontologylateral root development1
GO:0009725
IEA
GOA Databaseresponse to hormone
GO:0009725
IEA
InterProresponse to hormone
GO:0006355
TAS, IEA
Gene Ontologyregulation of transcription, DNA-templated2
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0010311
IGI
Gene Ontologylateral root formation3
GO:0009723
IGI
Gene Ontologyresponse to ethylene4
GO:0048366
IGI
Gene Ontologyleaf development1
GO:0045893
IMP
Gene Ontologypositive regulation of transcription, DNA-templated5
GO:0009630
TAS
Gene Ontologygravitropism5
GO:0040008
TAS
Gene Ontologyregulation of growth6
GO:0009733
IMP
Gene Ontologyresponse to auxin6
GO:0009785
IMP
Gene Ontologyblue light signaling pathway7
GO:0009638
IMP
Gene Ontologyphototropism7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
Gene OntologyDNA binding3
GO:0003677
IEA
InterProDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding8
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity9

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus3
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003340 B3 DNA binding domain
IPR033389 AUX/IAA domain
IPR015300 DNA-binding pseudobarrel domain superfamily
IPR044835 Auxin response factor
IPR010525 Auxin response factor domain
Mapman id Description
11.2.2.4 Phytohormone action.auxin.perception and signal transduction.signal mediator (ARF7/ARF19)
15.5.5.1 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF)