Gene: AT5G20170
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G20170
- Transcript Identifier AT5G20170.1
- Gene Type Coding gene
- Location Chr5 : 6807554-6810729 : negative
Gene Family Information
- ID HOM05D005966
- #Genes/#Species 132/94
- Phylogenetic origin
- ID ORTHO05D007584
- #Genes/#Species 129/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G20170.1
- uniprot F4K460
Descriptions
- Description RNA polymerase II transcription mediator
- Computational description RNA polymerase II transcription mediators; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med17 (InterPro:IPR019313); Has 84 Blast hits to 82 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 6; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0035196 | IMP | Gene Ontology | production of miRNAs involved in gene silencing by miRNA | 1 |
GO:0006357 | IEA | GOA Database | regulation of transcription by RNA polymerase II | |
GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 2 |
GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003712 | IEA | GOA Database | transcription coregulator activity | |
GO:0003712 | IBA | Gene Ontology | transcription coregulator activity | 2 |
GO:0003712 | IEA | InterPro | transcription coregulator activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | ISM | Gene Ontology | nucleus | |
GO:0016592 | IEA | GOA Database | mediator complex | |
GO:0016592 | IDA IBA | Gene Ontology | mediator complex | 2 3 |
GO:0016592 | IEA | InterPro | mediator complex | |
GO:0070847 | IBA | Gene Ontology | core mediator complex | 2 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR019313 | Mediator complex, subunit Med17 |
Mapman id | Description |
---|---|
15.3.4.4.1.4 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED17 |