Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 0.0e+00 1279.6 654 100.0
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 0.0e+00 1209.5 650 95.2
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 0.0e+00 1203.0 651 94.8
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 0.0e+00 1147.5 654 90.2
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 0.0e+00 1124.4 654 88.4
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 0.0e+00 1122.1 654 88.4
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1114.4 652 87.9
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 0.0e+00 1108.2 653 87.6
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1105.1 652 87.4
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 0.0e+00 1093.2 651 86.6
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 5.6e-297 1023.8 656 80.6
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 2.9e-253 878.6 655 72.2
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.6e-222 776.5 666 62.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.9e-221 772.3 667 62.5
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 1.0e-218 763.8 659 60.5
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 8.8e-218 760.8 672 59.8
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.2e-217 760.4 660 61.4
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 3.4e-217 758.8 668 61.8
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 5.7e-217 758.1 662 59.8
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.8e-216 755.7 662 58.8
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.1e-215 753.8 673 61.5
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 7.8e-214 747.7 663 60.5
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 2.5e-212 742.7 662 60.1
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 4.0e-210 735.3 664 58.1
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 8.9e-210 734.2 664 58.9
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.5e-209 733.4 662 59.1
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 1.4e-207 726.9 659 58.7
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 7.8e-206 721.1 667 59.8
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 7.8e-206 721.1 671 58.7
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.0e-205 720.7 675 59.1
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 1.7e-205 719.9 659 58.3
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.5e-204 716.8 659 58.1
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 3.3e-204 715.7 665 57.4
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 7.3e-204 714.5 675 58.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.6e-203 713.4 667 57.0
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 3.1e-202 709.1 659 58.9
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 4.0e-202 708.8 664 57.5
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 7.5e-201 704.5 663 57.2
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 1.3e-200 703.7 660 57.4
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 2.2e-200 703.0 669 57.2
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.1e-199 700.7 665 57.4
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.9e-199 699.9 663 57.0
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 3.2e-199 699.1 665 57.3
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 4.1e-199 698.7 669 56.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.4e-199 698.4 658 57.0
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 5.4e-199 698.4 664 57.1
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 4.6e-198 695.3 664 56.8
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 7.8e-198 694.5 656 56.2
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.3e-197 693.7 663 55.8
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 6.6e-197 691.4 674 57.3
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 8.6e-197 691.0 757 51.5
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.5e-196 690.3 672 56.0
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.6e-195 685.6 663 55.8
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 3.6e-195 685.6 655 57.4
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 1.8e-194 683.3 666 55.9
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.8e-194 683.3 680 54.4
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.8e-194 683.3 680 54.4
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 6.8e-194 681.4 655 56.8
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.5e-193 680.2 658 55.3
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 3.4e-193 679.1 655 56.5
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 7.5e-193 677.9 666 54.7
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 1.7e-192 676.8 655 55.4
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.1e-191 674.1 659 55.7
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 4.1e-191 672.2 670 54.5
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.5e-190 669.1 638 56.7
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 1.0e-189 667.5 663 56.4
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.7e-189 666.8 682 52.9
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.3e-189 666.4 659 55.8
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 3.9e-189 665.6 658 56.5
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 3.9e-189 665.6 667 55.6
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 1.5e-188 663.7 665 53.1
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.9e-188 663.3 655 55.7
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.9e-188 663.3 665 52.8
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 1.9e-188 663.3 662 54.7
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 5.6e-188 661.8 657 54.0
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.3e-188 661.4 919 43.9
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 6.8e-186 654.8 672 54.6
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 6.8e-186 654.8 666 53.2
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.2e-185 654.1 668 52.5
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 1.5e-185 653.7 665 54.1
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.0e-185 653.3 660 55.0
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.3e-184 650.6 648 54.3
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.7e-184 650.2 648 54.8
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.9e-184 649.4 640 54.5
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.9e-184 649.4 623 55.4
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 1.3e-181 640.6 747 48.7
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.1e-180 637.5 675 54.2
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 6.9e-178 628.2 656 52.3
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 2.8e-171 606.3 586 55.6
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 4.0e-170 602.4 672 49.3
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 9.0e-170 601.3 664 49.7
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 5.3e-162 575.5 673 46.7
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 6.9e-162 575.1 649 47.9
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 9.3e-159 564.7 715 46.6
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 3.5e-158 562.8 621 48.5
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 3.5e-158 562.8 661 47.0
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.3e-149 534.3 664 44.7
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 4.3e-148 529.3 493 59.2
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 8.2e-147 525.0 686 47.2
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 1.4e-143 514.2 658 43.8
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 2.0e-132 477.2 712 38.6
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 2.0e-129 467.2 564 46.8
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 7.4e-124 448.7 653 40.0
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.3e-123 448.0 523 48.2
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 4.5e-113 412.9 535 44.7
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 3.7e-91 340.1 298 60.7
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 5.0e-88 329.7 524 39.9
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 7.0e-82 309.3 707 31.7
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 3.6e-78 297.0 652 31.6
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.2e-74 283.9 387 44.2
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 7.1e-74 282.7 649 30.4
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.6e-54 217.2 165 67.3
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 1.5e-44 185.3 475 29.7
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.6e-44 184.5 140 69.3
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.0e-35 156.0 136 61.0
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 7.4e-31 139.8 153 49.0
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.2e-30 138.3 357 33.3
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.0e-27 129.4 100 70.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 5.5e-26 123.6 244 37.3
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.9e-24 117.5 178 44.4
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 9.7e-15 86.3 50 80.0
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.7e-14 84.3 134 35.1
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.1e-13 82.8 58 63.8
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.8e-13 82.0 101 42.6
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.5e-10 71.6 60 51.7
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 3.2e-10 71.2 49 69.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 5.7e-07 60.5 70 42.9
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.3e-06 59.3 35 80.0
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.8e-06 58.2 38 76.3


User provided reference genes

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