Gene: AT5G15800

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15800
  • Transcript Identifier AT5G15800.2
  • Gene Type Coding gene
  • Location Chr5 : 5151594-5153767 : negative

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15800.2
  • symbol SEP1
  • Alias AGL2,AGAMOUS-like 2
  • full_name SEPALLATA1
  • uniprot P29382

Descriptions

  • Description K-box region and MADS-box transcription factor family protein
  • Computational description SEPALLATA1 (SEP1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G02310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010364
ISO
PLAZA Integrative Orthologyregulation of ethylene biosynthetic process Solyc05g012020.4
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc05g012020.4
GO:0016117
ISO
PLAZA Integrative Orthologycarotenoid biosynthetic process Solyc05g012020.4
GO:0045944
IEA
Gene Ontologypositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IDA
Gene Ontologyregulation of transcription, DNA-templated1
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0030154
IEA
GOA Databasecell differentiation
GO:0009908
IEA
GOA Databaseflower development
GO:0009908
IDA
Gene Ontologyflower development2
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II3
GO:0048481
IMP
IBA
Gene Ontologyplant ovule development3 4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000977
IEA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IDA
ISS
Gene OntologyDNA-binding transcription factor activity1 5
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding3
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific3
GO:0005515
IPI
Gene Ontologyprotein binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR002487 Transcription factor, K-box
IPR002100 Transcription factor, MADS-box
IPR033896 MADS MEF2-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)