Gene: AT5G12280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G12280
  • Transcript Identifier AT5G12280.2
  • Gene Type Coding gene
  • Location Chr5 : 3972293-3972960 : negative

Gene Family Information

  • ID HOM05D002594
  • #Genes/#Species 263/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G12280.2
  • uniprot Q5XV45

Descriptions

  • Description SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
  • Computational description SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (TAIR:AT3G49130.1); Has 61 Blast hits to 43 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0045292
IEA
Gene OntologymRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D002594

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035967 SWAP/Surp superfamily
IPR045146 Splicing factor 3A subunit 1
IPR000061 SWAP/Surp
Mapman id Description
35.1 not assigned.annotated