Gene: AT5G09660

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G09660
  • Transcript Identifier AT5G09660.1
  • Gene Type Coding gene
  • Location Chr5 : 2993645-2995551 : negative

Gene Family Information

  • ID HOM05D000878
  • #Genes/#Species 677/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G09660.1
  • symbol PMDH2
  • uniprot Q9ZP05

Descriptions

  • Description peroxisomal NAD-malate dehydrogenase 2
  • Computational description peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17070 Blast hits to 17068 proteins in 5416 species: Archae - 235; Bacteria - 12016; Metazoa - 1211; Fungi - 533; Plants - 741; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006097
IEA
GOA Databaseglyoxylate cycle
GO:0006099
IEA
Gene Ontologytricarboxylic acid cycle
GO:0006099
IEA
InterProtricarboxylic acid cycle
GO:0019752
IEA
Gene Ontologycarboxylic acid metabolic process
GO:0019752
IEA
InterProcarboxylic acid metabolic process
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0031998
IMP, IGI
Gene Ontologyregulation of fatty acid beta-oxidation1
GO:0006108
IEA
Gene Ontologymalate metabolic process
GO:0080093
IMP
Gene Ontologyregulation of photorespiration2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016615
IEA
GOA Databasemalate dehydrogenase activity
GO:0016615
ISS
Gene Ontologymalate dehydrogenase activity3
GO:0030060
IBA
IEA
Gene OntologyL-malate dehydrogenase activity4
GO:0030060
IEA
InterProL-malate dehydrogenase activity
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016616
IEA
GOA Databaseoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016616
IEA
InterProoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM, IBA
Gene Ontologycytoplasm4
GO:0009507
HDA
IBA
Gene Ontologychloroplast4 5
GO:0005777
IEA
GOA Databaseperoxisome
GO:0005777
IDA, HDA
Gene Ontologyperoxisome1 6
GO:0042579
ISS
Gene Ontologymicrobody3
GO:0009941
HDA
Gene Ontologychloroplast envelope7
GO:0000325
HDA
Gene Ontologyplant-type vacuole8
GO:0048046
HDA
Gene Ontologyapoplast9
GO:0005886
HDA
Gene Ontologyplasma membrane10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010097 Malate dehydrogenase, type 1
IPR036291 NAD(P)-binding domain superfamily
IPR001557 L-lactate/malate dehydrogenase
IPR001236 Lactate/malate dehydrogenase, N-terminal
IPR022383 Lactate/malate dehydrogenase, C-terminal
IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
Mapman id Description
5.7.3.6.5 Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.peroxisomal NAD-dependent malate dehydrogenase