Gene: AT5G09240

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G09240
  • Transcript Identifier AT5G09240.3
  • Gene Type Coding gene
  • Location Chr5 : 2873936-2874780 : negative

Gene Family Information

  • ID HOM05D001889
  • #Genes/#Species 349/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G09240.3
  • uniprot Q9FY90

Descriptions

  • Description ssDNA-binding transcriptional regulator
  • Computational description ssDNA-binding transcriptional regulator; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09250.1); Has 231 Blast hits to 228 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 36; Plants - 91; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
  • Computational description ssDNA-binding transcriptional regulator; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0060261
IBA
IEA
Gene Ontologypositive regulation of transcription initiation from RNA polymerase II promoter1
GO:0060261
IEA
InterPropositive regulation of transcription initiation from RNA polymerase II promoter
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003713
IBA
IEA
Gene Ontologytranscription coactivator activity1
GO:0003713
IEA
InterProtranscription coactivator activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005667
IBA
Gene Ontologytranscription regulator complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003173 Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 ssDNA-binding transcriptional regulator
IPR045125 RNA polymerase II transcriptional coactivator Sub1/Tcp4-like
Mapman id Description
15.5.53 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (P15)