Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G09240 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 2.7e-64 248.4 121 100.0
AL6G19630 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 5.4e-36 154.5 82 90.2
Thhalv10014921m.g Eutrema salsugineum HOM05D001889 ORTHO05D001853 6.8e-23 110.9 90 67.8
Sp6g34060 Schrenkiella parvula HOM05D001889 ORTHO05D001853 6.8e-23 110.9 90 67.8
AL6G19640 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 1.2e-22 110.2 90 67.8
AT5G09250 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 1.5e-22 109.8 90 66.7
CARHR204180 Cardamine hirsuta HOM05D001889 ORTHO05D001853 3.4e-22 108.6 90 67.8
BolC9t59566H Brassica oleracea HOM05D001889 ORTHO05D001853 4.4e-22 108.2 111 57.7
C09p68070 Brassica napus HOM05D001889 ORTHO05D001853 7.5e-22 107.5 90 65.6
C09p68100 Brassica napus HOM05D001889 ORTHO05D001853 7.5e-22 107.5 90 65.6
C09p68130 Brassica napus HOM05D001889 ORTHO05D001853 7.5e-22 107.5 90 65.6
Carub.0006s0780 Capsella rubella HOM05D001889 ORTHO05D001853 7.5e-22 107.5 90 65.6
A10p27960 Brassica napus HOM05D001889 ORTHO05D001853 9.8e-22 107.1 90 65.6
C09p68160 Brassica napus HOM05D001889 ORTHO05D001853 9.8e-22 107.1 95 64.2
BcaB08g37223 Brassica carinata HOM05D001889 ORTHO05D001853 1.3e-21 106.7 90 65.6
BolC2t06339H Brassica oleracea HOM05D001889 ORTHO05D001853 1.7e-21 106.3 87 64.4
Aa31LG3G17750 Aethionema arabicum HOM05D001889 ORTHO05D001853 2.4e-20 102.4 90 62.2
BcaB05g21562 Brassica carinata HOM05D001889 ORTHO05D001853 5.4e-20 101.3 91 62.6
C02p03780 Brassica napus HOM05D001889 ORTHO05D001853 9.2e-20 100.5 90 62.2
BcaC03g13246 Brassica carinata HOM05D001889 ORTHO05D001853 3.5e-19 98.6 90 61.1
THA.LOC104818417 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 4.6e-19 98.2 90 61.1
Gorai.007G066500 Gossypium raimondii HOM05D001889 ORTHO05D001853 4.4e-14 81.6 81 53.1
Gohir.D11G061700 Gossypium hirsutum HOM05D001889 ORTHO05D001853 7.5e-14 80.9 81 51.9
TWI79G0390 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 9.8e-14 80.5 120 42.5
Gohir.A11G057500 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.3e-13 80.1 77 53.2
Manes.12G159100 Manihot esculenta HOM05D001889 ORTHO05D001853 3.7e-13 78.6 101 48.5
RcHm_v2.0_Chr2g0122541 Rosa chinensis HOM05D001889 ORTHO05D001853 4.9e-13 78.2 78 56.4
COL.COLO4_35809 Corchorus olitorius HOM05D001889 ORTHO05D001853 6.4e-13 77.8 82 50.0
Gohir.D09G004700 Gossypium hirsutum HOM05D001889 ORTHO05D001853 6.4e-13 77.8 90 48.9
Gorai.006G006300 Gossypium raimondii HOM05D001889 ORTHO05D001853 6.4e-13 77.8 90 48.9
Duzib264G0580 Durio zibethinus HOM05D001889 ORTHO05D001853 8.3e-13 77.4 90 47.8
FAN26G0961 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.1e-12 77.0 79 53.2
Thecc.01G136800 Theobroma cacao HOM05D001889 ORTHO05D001853 1.1e-12 77.0 90 47.8
MD01G1006400 Malus domestica HOM05D001889 ORTHO05D001853 1.4e-12 76.6 79 53.2
Atru.chr4.998 Acer truncatum HOM05D001889 ORTHO05D001853 2.4e-12 75.9 89 46.1
Lalb_Chr08g0238181 Lupinus albus HOM05D001889 ORTHO05D001853 3.2e-12 75.5 77 55.8
Cpa.g.sc37.10 Carica papaya HOM05D001889 ORTHO05D001853 4.1e-12 75.1 78 51.3
Gohir.A09G005400 Gossypium hirsutum HOM05D001889 ORTHO05D001853 4.1e-12 75.1 77 51.9
Prupe.4G275800 Prunus persica HOM05D001889 ORTHO05D001853 4.1e-12 75.1 79 53.2
Hund07234 Selenicereus undatus HOM05D001889 ORTHO05D001853 4.1e-12 75.1 76 51.3
Ciclev10002914m.g Citrus clementina HOM05D001889 ORTHO05D001853 1.2e-11 73.6 89 44.9
FAN23G3065 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.6e-11 73.2 79 50.6
arahy.Tifrunner.gnm1.ann1.LMT1Q9 Arachis hypogaea HOM05D001889 ORTHO05D001853 2.1e-11 72.8 83 50.6
TAR376G0469 Trochodendron aralioides HOM05D001889 ORTHO05D001853 2.7e-11 72.4 77 51.9
arahy.Tifrunner.gnm1.ann1.9W5UDX Arachis hypogaea HOM05D001889 ORTHO05D001853 4.6e-11 71.6 83 49.4
Ah.06g191040 Amaranthus hybridus HOM05D001889 ORTHO05D001853 1.0e-10 70.5 76 53.9
Sed0002663 Sechium edule HOM05D001889 ORTHO05D001853 1.0e-10 70.5 77 49.4
Lj1g0012003 Lotus japonicus HOM05D001889 ORTHO05D001853 1.7e-10 69.7 78 52.6
FAN28G1280 Fragaria x ananassa HOM05D001889 ORTHO05D001853 3.9e-10 68.6 101 44.6
Ca_16983_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 5.1e-10 68.2 74 47.3
Phvul.009G154400 Phaseolus vulgaris HOM05D001889 ORTHO05D001853 5.1e-10 68.2 78 52.6
Haze_25372 Corylus avellana HOM05D001889 ORTHO05D001853 6.6e-10 67.8 83 47.0
AUR62006860 Chenopodium quinoa HOM05D001889 ORTHO05D001853 8.6e-10 67.4 76 47.4
Psat5g060280 Pisum sativum HOM05D001889 ORTHO05D001853 1.1e-09 67.0 75 46.7
ClCG04G001990 Citrullus lanatus HOM05D001889 ORTHO05D001853 1.5e-09 66.6 77 46.8
CsaV3_4G030720 Cucumis sativus L. HOM05D001889 ORTHO05D001853 1.5e-09 66.6 77 48.1
AUR62000517 Chenopodium quinoa HOM05D001889 ORTHO05D001853 2.5e-09 65.9 76 46.1
MELO3C008937.2 Cucumis melo HOM05D001889 ORTHO05D001853 3.3e-09 65.5 77 46.8
TPR.G20603 Trifolium pratense HOM05D001889 ORTHO05D001853 4.3e-09 65.1 81 45.7
FvH4_1g24880 Fragaria vesca HOM05D001889 ORTHO05D001853 5.6e-09 64.7 79 46.8
Glyma.06G155900 Glycine max HOM05D001889 ORTHO05D001853 5.6e-09 64.7 78 51.3
TWI31G0409 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 5.6e-09 64.7 77 44.2
TWI31G0820 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 5.6e-09 64.7 77 44.2
PGR119G2499 Punica granatum HOM05D001889 ORTHO05D001853 7.3e-09 64.3 73 53.4
TAR628G0709 Trochodendron aralioides HOM05D001889 ORTHO05D001853 7.3e-09 64.3 88 43.2
MBI06_g35207_MAGBIO Magnolia biondii HOM05D001889 ORTHO05D001853 1.2e-08 63.5 76 44.7
Oeu037857.1 Olea europaea HOM05D001889 ORTHO05D001853 1.2e-08 63.5 84 40.5
FAN19G0758 Fragaria x ananassa HOM05D001889 ORTHO05D001853 2.8e-08 62.4 79 45.6
Glyma.04G210100 Glycine max HOM05D001889 ORTHO05D001853 2.8e-08 62.4 78 50.0
MD15G1135200 Malus domestica HOM05D001889 ORTHO05D001853 2.8e-08 62.4 79 46.8
Migut.L00273 Erythranthe guttata HOM05D001889 ORTHO05D001853 3.6e-08 62.0 90 41.1
Sc15g0002380 Simmondsia chinensis HOM05D001889 ORTHO05D001853 3.6e-08 62.0 79 44.3
VMungo1309G2558 Vigna mungo HOM05D001889 ORTHO05D001853 4.7e-08 61.6 84 46.4
Peaxi162Scf00121g00210 Petunia axillaris HOM05D001889 ORTHO05D001853 6.2e-08 61.2 74 44.6
Solyc02g061790.4 Solanum lycopersicum HOM05D001889 ORTHO05D001853 8.1e-08 60.8 74 44.6
Sopen02g012830 Solanum pennellii HOM05D001889 ORTHO05D001853 8.1e-08 60.8 74 44.6
GSVIVG01022341001 Vitis vinifera HOM05D001889 ORTHO05D001853 8.1e-08 60.8 77 45.5
EL10Ac4g09624 Beta vulgaris HOM05D001889 ORTHO05D001853 1.1e-07 60.5 76 48.7
Nitab4.5_0001310g0060 Nicotiana tabacum HOM05D001889 ORTHO05D001853 1.1e-07 60.5 74 44.6
Cc08_g05970 Coffea canephora HOM05D001889 ORTHO05D001853 1.4e-07 60.1 76 43.4
Nitab4.5_0000188g0350 Nicotiana tabacum HOM05D001889 ORTHO05D001853 1.4e-07 60.1 74 44.6
PGSC0003DMG400008674 Solanum tuberosum HOM05D001889 ORTHO05D001853 1.8e-07 59.7 74 44.6
Lsat_1_v5_gn_5_69420 Lactuca sativa HOM05D001889 ORTHO05D001853 2.3e-07 59.3 78 44.9
Dinv04452 Davidia involucrata HOM05D001889 ORTHO05D001853 5.2e-07 58.2 79 43.0
Medtr3g096690 Medicago truncatula HOM05D001889 ORTHO05D001853 5.2e-07 58.2 78 44.9
Nn1g08969 Nelumbo nucifera HOM05D001889 ORTHO05D001853 6.8e-07 57.8 77 42.9
MSTRG.23484 Avicennia marina HOM05D001889 ORTHO05D001853 8.9e-07 57.4 79 43.0
CAN.G23.2 Capsicum annuum HOM05D001889 ORTHO05D001853 8.9e-07 57.4 76 42.1
MBI19_g04953_MAGBIO Magnolia biondii HOM05D001889 ORTHO05D001853 1.2e-06 57.0 77 40.3
CDE06G2024 Ceratophyllum demersum HOM05D001889 ORTHO05D001853 2.6e-06 55.8 77 41.6
Nn5g28431 Nelumbo nucifera HOM05D001889 ORTHO05D001853 2.6e-06 55.8 77 44.2
SalBow7G2453 Salvia bowleyana HOM05D001889 ORTHO05D001853 2.6e-06 55.8 80 41.2
Eucgr.I00122 Eucalyptus grandis HOM05D001889 ORTHO05D001853 3.4e-06 55.5 78 42.3
PSO170G2682 Papaver somniferum HOM05D001889 ORTHO05D001853 3.4e-06 55.5 76 43.4
BraA02t04973Z Brassica rapa HOM05D001889 ORTHO05D001853 4.4e-06 55.1 79 40.5
PSO528G0001 Papaver somniferum HOM05D001889 ORTHO05D001853 7.6e-06 54.3 78 44.9
vmacro12748 Vaccinium macrocarpon HOM05D001889 ORTHO05D001853 9.9e-06 53.9 38 57.9


User provided reference genes

Program Settings