Gene: AT5G08540
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G08540
- Transcript Identifier AT5G08540.1
- Gene Type Coding gene
- Location Chr5 : 2763914-2765431 : positive
Gene Family Information
- ID HOM05D005205
- #Genes/#Species 145/94
- Phylogenetic origin
- ID ORTHO05D006155
- #Genes/#Species 146/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G08540.1
- uniprot Q93VT6
Descriptions
- Description ribosomal RNA small subunit methyltransferase J
- Computational description unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032259 | IEA | GOA Database | methylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0008168 | IEA | GOA Database | methyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IDA | GOA Database | chloroplast | |
| GO:0009507 | HDA ISM | Gene Ontology | chloroplast | 1 |
| GO:0009941 | IDA | GOA Database | chloroplast envelope | |
| GO:0009941 | HDA IBA | Gene Ontology | chloroplast envelope | 2 3 |
| GO:0009535 | IDA | GOA Database | chloroplast thylakoid membrane | |
| GO:0009535 | HDA IBA | Gene Ontology | chloroplast thylakoid membrane | 3 4 |
| GO:0009536 | IDA | GOA Database | plastid | |
| GO:0009536 | HDA | Gene Ontology | plastid | 5 |
| GO:0005886 | HDA | Gene Ontology | plasma membrane | 6 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
No InterPro domains detected for this gene.
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |