Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 9.3e-174 613.6 327 100.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 7.9e-165 583.9 327 95.1
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 3.8e-159 565.1 326 92.3
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 8.7e-148 527.3 327 85.6
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.4e-140 503.4 341 80.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 2.2e-138 496.1 337 82.5
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.9e-134 483.0 334 78.7
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.9e-134 483.0 332 81.3
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.9e-134 483.0 332 81.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 6.7e-132 474.6 332 79.8
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.7e-130 469.9 332 78.9
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 7.2e-126 454.5 327 76.5
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.2e-122 443.0 339 74.6
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.7e-122 442.2 339 74.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 5.3e-121 438.3 339 73.5
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-120 437.2 339 73.7
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.7e-117 426.0 339 71.7
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 7.5e-115 417.9 333 72.7
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.2e-102 375.6 304 65.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 7.2e-102 374.8 306 62.7
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 9.5e-102 374.4 249 75.5
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.2e-101 374.0 326 62.3
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.8e-101 372.9 319 64.9
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 8.0e-101 371.3 243 74.5
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.0e-100 370.9 275 70.2
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.0e-100 370.9 299 65.6
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.4e-100 370.5 243 74.5
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.4e-100 370.5 243 74.5
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.4e-100 370.5 247 74.1
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.8e-100 370.2 293 66.6
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.3e-100 369.8 243 76.5
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.3e-100 369.8 311 62.4
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 8.9e-100 367.9 249 71.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 8.9e-100 367.9 319 64.6
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.2e-99 367.5 240 76.2
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.6e-99 366.3 316 62.7
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.6e-99 366.3 243 75.7
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.4e-99 365.9 321 62.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.4e-99 365.5 243 75.3
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 9.8e-99 364.4 280 67.9
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.3e-98 364.0 243 75.3
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-98 364.0 276 67.8
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.2e-98 363.2 297 65.3
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.8e-98 362.8 243 72.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.8e-98 362.8 246 72.8
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.7e-98 362.5 243 75.3
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 3.7e-98 362.5 250 71.2
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.7e-98 362.5 330 61.2
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 4.9e-98 362.1 241 73.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.9e-98 362.1 242 73.6
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 6.3e-98 361.7 299 64.9
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 6.3e-98 361.7 272 69.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 8.3e-98 361.3 243 72.4
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 8.3e-98 361.3 246 72.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.1e-97 360.9 310 62.6
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-97 360.9 316 63.3
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.4e-97 360.5 299 63.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.4e-97 360.5 272 69.1
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.8e-97 360.1 322 62.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.8e-97 360.1 316 62.7
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 4.1e-97 359.0 301 65.8
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.1e-97 359.0 255 68.6
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 7.0e-97 358.2 275 67.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.2e-96 357.5 313 63.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.6e-96 357.1 322 60.6
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.7e-96 356.3 241 72.2
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 5.9e-96 355.1 308 63.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 5.9e-96 355.1 301 65.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.0e-95 354.4 243 72.0
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.7e-95 353.6 300 62.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.1e-94 350.9 339 58.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.1e-94 350.9 248 69.8
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.9e-94 350.1 286 64.0
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.9e-94 350.1 257 69.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.5e-94 349.7 279 65.6
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 5.6e-94 348.6 307 61.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 7.3e-94 348.2 241 70.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.1e-93 346.7 241 72.2
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 2.8e-93 346.3 239 72.8
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 3.6e-93 345.9 242 70.2
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 4.7e-93 345.5 243 72.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 6.1e-93 345.1 275 65.1
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.4e-92 344.0 310 62.3
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.8e-92 343.6 307 61.6
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 6.8e-92 341.7 243 70.8
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.2e-91 340.9 284 63.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.2e-91 340.9 239 69.9
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.5e-91 340.5 316 58.5
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.5e-91 340.5 301 60.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.6e-91 339.7 242 70.7
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 7.5e-91 338.2 298 60.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 9.8e-91 337.8 239 69.9
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 9.8e-91 337.8 304 58.6
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 6.4e-90 335.1 297 64.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 9.2e-89 331.3 317 58.4
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.1e-86 324.3 293 62.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 8.9e-84 314.7 325 53.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.7e-79 300.4 219 69.4
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.2e-72 277.7 197 71.1
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.5e-70 270.8 239 59.8
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 9.6e-70 268.1 290 54.8
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.6e-69 267.3 317 47.0
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-68 264.2 241 53.1
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.5e-67 260.8 248 52.0
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.7e-64 250.0 275 50.9
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.2e-56 224.6 232 50.9
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 6.0e-56 222.2 164 68.9
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.0e-55 221.5 228 52.2
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 6.6e-55 218.8 134 78.4
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.0e-51 207.2 204 58.3
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.0e-47 193.4 226 51.8
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.6e-45 187.6 118 79.7
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.5e-43 179.5 141 67.4
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 8.4e-42 175.3 164 58.5
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.5e-40 169.9 150 59.3
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.3e-39 167.9 165 57.0
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.3e-36 156.0 108 71.3
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 5.3e-36 156.0 194 51.5
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.5e-35 154.5 182 50.0
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 4.5e-35 152.9 120 63.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-27 127.9 105 61.9
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 5.9e-27 125.9 94 68.1
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.0e-26 125.2 88 67.0
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.9e-25 120.9 100 61.0
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.5e-25 120.6 74 78.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 3.0e-23 113.6 200 34.5
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.0e-23 113.6 146 44.5
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.5e-22 111.3 70 72.9
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 3.8e-18 96.7 79 55.7
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.8e-18 96.7 76 63.2
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.5e-17 94.0 132 40.9
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 2.5e-17 94.0 137 40.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 3.2e-17 93.6 67 70.1
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 7.2e-17 92.4 56 80.4
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 2.3e-15 87.4 50 78.0
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.7e-15 85.9 162 35.8
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.7e-14 82.8 55 72.7
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.4e-12 77.4 92 50.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 2.4e-12 77.4 96 50.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.0e-12 75.9 149 35.6
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.7e-10 71.2 127 38.6
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 3.6e-08 63.5 38 73.7
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 4.7e-08 63.2 62 53.2
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 8.8e-07 58.9 55 47.3


User provided reference genes

Program Settings