Gene: AT4G39890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G39890
  • Transcript Identifier AT4G39890.1
  • Gene Type Coding gene
  • Location Chr4 : 18506112-18507459 : positive

Gene Family Information

  • ID HOM05D000064
  • #Genes/#Species 3993/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G39890.1
  • symbol RABH1c
  • Alias AtRABH1c,RAB GTPase homolog H1C
  • uniprot Q9SMR4

Descriptions

  • Description RAB GTPase homolog H1C
  • Computational description RAB GTPase homolog H1C (RABH1c); FUNCTIONS IN: protein binding, GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1D (TAIR:AT2G22290.1); Has 29075 Blast hits to 29047 proteins in 763 species: Archae - 19; Bacteria - 140; Metazoa - 15282; Fungi - 4003; Plants - 3503; Viruses - 20; Other Eukaryotes - 6108 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006886
IBA
Gene Ontologyintracellular protein transport1
GO:0006891
IBA
Gene Ontologyintra-Golgi vesicle-mediated transport1
GO:0006890
IBA
Gene Ontologyretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum1
GO:0042147
IBA
Gene Ontologyretrograde transport, endosome to Golgi1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
GOA DatabaseGTPase activity
GO:0003924
IBA
Gene OntologyGTPase activity1
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
IDA
Gene Ontologycytosol3
GO:0005737
IEA
GOA Databasecytoplasm
GO:0016020
IEA
GOA Databasemembrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
ISM, IBA
Gene OntologyGolgi apparatus1
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0000139
IDA
Gene OntologyGolgi membrane3
GO:0012505
IBA
Gene Ontologyendomembrane system1
GO:0005886
HDA
Gene Ontologyplasma membrane4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001806 Small GTPase
IPR005225 Small GTP-binding protein domain
Mapman id Description
22.3.4.1.8 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.H-class RAB GTPase