Gene: AT4G38430
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G38430
- Transcript Identifier AT4G38430.1
- Gene Type Coding gene
- Location Chr4 : 17986643-17988659 : positive
Gene Family Information
- ID HOM05D000346
- #Genes/#Species 1367/97
- Phylogenetic origin
- ID ORTHO05D000326
- #Genes/#Species 1104/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G38430.1
- symbol ROPGEF1
- Alias ATROPGEF1
- full_name ROP (rho of plants) guanine nucleotide exchange factor 1
- uniprot Q93ZY2
Descriptions
- Description rho guanyl-nucleotide exchange factor 1
- Computational description rho guanyl-nucleotide exchange factor 1 (ROPGEF1); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009860 | IMP | Gene Ontology | pollen tube growth | 1 |
| GO:0080092 | IGI | Gene Ontology | regulation of pollen tube growth | 2 |
| GO:2000012 | IMP | Gene Ontology | regulation of auxin polar transport | 3 |
| GO:2001108 | IMP | Gene Ontology | positive regulation of Rho guanyl-nucleotide exchange factor activity | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005085 | IDA, IMP | Gene Ontology | guanyl-nucleotide exchange factor activity | 3 4 |
| GO:0005085 | IEA | InterPro | guanyl-nucleotide exchange factor activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0016324 | IDA | Gene Ontology | apical plasma membrane | 1 |
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0005886 | IDA | Gene Ontology | plasma membrane | 3 |
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 27.4.3.1 | Multi-process regulation.Rop-GTPase regulatory system.RopGEF guanine nucleotide exchange factor activities.exchange factor (PRONE) |