Gene: AT4G33680

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G33680
  • Transcript Identifier AT4G33680.1
  • Gene Type Coding gene
  • Location Chr4 : 16171847-16174630 : negative

Gene Family Information

  • ID HOM05D002023
  • #Genes/#Species 327/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G33680.1
  • symbol AGD2
  • full_name ABERRANT GROWTH AND DEATH 2
  • uniprot Q93ZN9

Descriptions

  • Description Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
  • Computational description ABERRANT GROWTH AND DEATH 2 (AGD2); FUNCTIONS IN: transaminase activity, copper ion binding, L,L-diaminopimelate aminotransferase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: LL-diaminopimelate aminotransferase, plant-related (InterPro:IPR019942), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AGD2-like defense response protein 1 (TAIR:AT2G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009058
IEA
GOA Databasebiosynthetic process
GO:0009058
IEA
InterProbiosynthetic process
GO:0009089
IGI
IEA
Gene Ontologylysine biosynthetic process via diaminopimelate1
GO:0009862
IMP
Gene Ontologysystemic acquired resistance, salicylic acid mediated signaling pathway2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008483
IEA
GOA Databasetransaminase activity
GO:0008483
IDA
Gene Ontologytransaminase activity3
GO:0008483
IEA
InterProtransaminase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
Gene Ontologypyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005507
IDA
GOA Databasecopper ion binding
GO:0005507
HDA
Gene Ontologycopper ion binding4
GO:0010285
IEA
GOA DatabaseL,L-diaminopimelate aminotransferase activity
GO:0010285
IDA
Gene OntologyL,L-diaminopimelate aminotransferase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
RCA
Gene Ontologycytosol5
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast3 6
GO:0005886
HDA
Gene Ontologyplasma membrane7
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma1 8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004839 Aminotransferase, class I/classII
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR019942 LL-diaminopimelate aminotransferase/aminotransferase ALD1
IPR015424 Pyridoxal phosphate-dependent transferase
Mapman id Description
4.1.2.2.3.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.LL-diaminopimelate aminotransferase