Gene: AT4G30860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G30860
  • Transcript Identifier AT4G30860.1
  • Gene Type Coding gene
  • Location Chr4 : 15024546-15027427 : positive

Gene Family Information

  • ID HOM05D000966
  • #Genes/#Species 619/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G30860.1
  • symbol SDG4
  • Alias ASHR3,ASH1-related 3
  • uniprot Q949T8

Descriptions

  • Description SET domain group 4
  • Computational description SET domain group 4 (SDG4); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ASHH3 (TAIR:AT2G44150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010452
IEA
GOA Databasehistone H3-K36 methylation
GO:0032259
IEA
GOA Databasemethylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018024
ISO
PLAZA Homology (enrichment)histone-lysine N-methyltransferase activity HOM05D000966
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046975
IBA
Gene Ontologyhistone methyltransferase activity (H3-K36 specific)1
GO:0042054
IDA
Gene Ontologyhistone methyltransferase activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 3
GO:0005694
IEA
GOA Databasechromosome
GO:0000785
IDA
IBA
Gene Ontologychromatin1 4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR003616 Post-SET domain
IPR001214 SET domain
IPR001965 Zinc finger, PHD-type
Mapman id Description
12.3.3.3 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-II histone methyltransferase (ASH)