Gene: AT4G30270
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G30270
- Transcript Identifier AT4G30270.1
- Gene Type Coding gene
- Location Chr4 : 14819445-14820448 : negative
Gene Family Information
- ID HOM05D000066
- #Genes/#Species 3967/96
- Phylogenetic origin
- ID ORTHO05D000055
- #Genes/#Species 2700/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G30270.1
- symbol XTH24
- Alias MERI-5,MERISTEM 5,MERI5B,meristem-5,SEN4,SENESCENCE 4
- uniprot P24806
Descriptions
- Description xyloglucan endotransglucosylase/hydrolase 24
- Computational description xyloglucan endotransglucosylase/hydrolase 24 (XTH24); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: aging, response to gibberellin stimulus, gibberellic acid mediated signaling pathway, response to brassinosteroid stimulus, plant-type cell wall loosening; LOCATED IN: cell wall, plasma membrane, cytoplasm, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2202 Blast hits to 2180 proteins in 308 species: Archae - 0; Bacteria - 283; Metazoa - 0; Fungi - 433; Plants - 1389; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005975 | IEA | GOA Database | carbohydrate metabolic process | |
GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
GO:0071555 | IEA | GOA Database | cell wall organization | |
GO:0008152 | IEA | GOA Database | metabolic process | |
GO:0006073 | IEA | GOA Database | cellular glucan metabolic process | |
GO:0006073 | IEA | InterPro | cellular glucan metabolic process | |
GO:0010411 | IEA | Gene Ontology | xyloglucan metabolic process | |
GO:0010411 | IEA | InterPro | xyloglucan metabolic process | |
GO:0042546 | IEA | Gene Ontology | cell wall biogenesis | |
GO:0042546 | IEA | InterPro | cell wall biogenesis | |
GO:0009739 | IGI | Gene Ontology | response to gibberellin | |
GO:0009740 | TAS | Gene Ontology | gibberellic acid mediated signaling pathway | |
GO:0009741 | IGI | Gene Ontology | response to brassinosteroid | |
GO:0009828 | TAS | Gene Ontology | plant-type cell wall loosening | 1 |
GO:0071669 | IMP | Gene Ontology | plant-type cell wall organization or biogenesis | 2 |
GO:0007568 | IEP | Gene Ontology | aging | 3 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016762 | IEA | GOA Database | xyloglucan:xyloglucosyl transferase activity | |
GO:0016762 | IDA TAS | Gene Ontology | xyloglucan:xyloglucosyl transferase activity | 4 |
GO:0016762 | IEA | InterPro | xyloglucan:xyloglucosyl transferase activity | |
GO:0016798 | IEA | GOA Database | hydrolase activity, acting on glycosyl bonds | |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0016740 | IEA | GOA Database | transferase activity | |
GO:0004553 | IEA | Gene Ontology | hydrolase activity, hydrolyzing O-glycosyl compounds | |
GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005886 | IDA | GOA Database | plasma membrane | |
GO:0005886 | HDA | Gene Ontology | plasma membrane | 5 |
GO:0009505 | IDA | GOA Database | plant-type cell wall | |
GO:0009505 | HDA | Gene Ontology | plant-type cell wall | 6 |
GO:0005737 | IDA | GOA Database | cytoplasm | |
GO:0005737 | HDA | Gene Ontology | cytoplasm | 7 |
GO:0005576 | IEA | GOA Database | extracellular region | |
GO:0005576 | ISM | Gene Ontology | extracellular region | |
GO:0005794 | IDA | GOA Database | Golgi apparatus | |
GO:0005794 | HDA | Gene Ontology | Golgi apparatus | 8 |
GO:0005618 | IDA IEA | GOA Database | cell wall | |
GO:0005618 | HDA | Gene Ontology | cell wall | 7 |
GO:0005618 | IEA | InterPro | cell wall | |
GO:0048046 | IEA | GOA Database | apoplast | |
GO:0048046 | IEA | InterPro | apoplast | |
GO:0099503 | HDA | Gene Ontology | secretory vesicle | 9 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
50.2.4 | Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase |