Gene: AT4G28680
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G28680
- Transcript Identifier AT4G28680.7
- Gene Type Coding gene
- Location Chr4 : 14155184-14157600 : positive
Gene Family Information
- ID HOM05D000834
- #Genes/#Species 714/100
- Phylogenetic origin
- ID ORTHO05D000909
- #Genes/#Species 559/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G28680.7
- symbol TYRDC
- Alias AtTYDC,TYDC,L-tyrosine decarboxylase,TYRDC1,L-TYROSINE DECARBOXYLASE 1
- uniprot Q9M0G4
Descriptions
- Description L-tyrosine decarboxylase
- Computational description L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1); Has 8292 Blast hits to 6272 proteins in 1930 species: Archae - 160; Bacteria - 2569; Metazoa - 2508; Fungi - 762; Plants - 340; Viruses - 8; Other Eukaryotes - 1945 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006587 | ISO | PLAZA Integrative Orthology | serotonin biosynthetic process from tryptophan | Os08g0140300 |
| GO:0006520 | IEA | Gene Ontology | cellular amino acid metabolic process | |
| GO:0006520 | IEA | InterPro | cellular amino acid metabolic process | |
| GO:0019752 | IEA | GOA Database | carboxylic acid metabolic process | |
| GO:0019752 | IEA | InterPro | carboxylic acid metabolic process | |
| GO:1901695 | IMP | Gene Ontology | tyramine biosynthetic process | 1 |
| GO:0009611 | IEP | Gene Ontology | response to wounding | 2 |
| GO:0009414 | IEP | Gene Ontology | response to water deprivation | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016831 | IBA IEA | Gene Ontology | carboxy-lyase activity | 3 |
| GO:0016831 | IEA | InterPro | carboxy-lyase activity | |
| GO:0036469 | ISO | PLAZA Integrative Orthology | L-tryptophan decarboxylase activity | Os08g0140300 |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0030170 | IEA | Gene Ontology | pyridoxal phosphate binding | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0016830 | IEA | GOA Database | carbon-carbon lyase activity | |
| GO:0016830 | IEA | InterPro | carbon-carbon lyase activity | |
| GO:0016829 | IEA | GOA Database | lyase activity | |
| GO:0004837 | IDA IEA | Gene Ontology | tyrosine decarboxylase activity | 2 |
| GO:0004058 | IDA | Gene Ontology | aromatic-L-amino-acid decarboxylase activity | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA ISM, IBA | Gene Ontology | cytoplasm | 2 3 |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 4.2.8.3 | Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase |