InterPro domain: IPR002129

General Information

  • Identifier IPR002129
  • Description Pyridoxal phosphate-dependent decarboxylase

Abstract

Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [ 1 , 2 , 3 ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors [ 4 ]. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy [ 5 ].

PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic [ 6 ].

A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [ 7 , 8 ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine [ 9 ]; tyrosine decarboxylase, which converts tyrosine into tyramine; histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine [ 10 ]; L-aspartate decarboxylase, which converts aspartate to beta-alanine [ 11 ]; and phenylacetaldehyde synthase that catalyses the decarboxylation of L-phenylalanine to 2-phenylethylamine [ 12 ]. These enzymes belong to the group II decarboxylases [ 13 , 13 ].


1. Pyridoxal enzymes: mechanistic diversity and uniformity. J. Biochem. 118, 463-73
2. Pyridoxal phosphate-dependent enzymes. Biochim. Biophys. Acta 1248, 81-96
3. Pyridoxal phosphate enzymes: mechanistic, structural, and evolutionary considerations. Annu. Rev. Biochem. 73, 383-415
4. Exploring the pyridoxal 5'-phosphate-dependent enzymes. J. Inherit. Metab. Dis. 6, 275-87
5. B6-responsive disorders: a model of vitamin dependency. J. Bacteriol. 29, 317-26
6. Reaction specificity in pyridoxal phosphate enzymes. Arch. Biochem. Biophys. 433, 279-87
7. Multiple evolutionary origin of pyridoxal-5'-phosphate-dependent amino acid decarboxylases. Eur. J. Biochem. 221, 997-1002
8. Prokaryotic and eukaryotic pyridoxal-dependent decarboxylases are homologous. J. Mol. Evol. 31, 325-9
9. Functionally important residues of aromatic L-amino acid decarboxylase probed by sequence alignment and site-directed mutagenesis. J. Biochem. 120, 369-76
10. Characterization and expression of the complementary DNA encoding rat histidine decarboxylase. Proc. Natl. Acad. Sci. U.S.A. 87, 733-7
11. An archaeal glutamate decarboxylase homolog functions as an aspartate decarboxylase and is involved in β-alanine and coenzyme A biosynthesis. J. Biol. Chem. 196, 1222-30
12. Plant phenylacetaldehyde synthase is a bifunctional homotetrameric enzyme that catalyzes phenylalanine decarboxylation and oxidation. null 281, 23357-66

Species distribution

Gene table

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