Gene: AT4G27910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G27910
  • Transcript Identifier AT4G27910.1
  • Gene Type Coding gene
  • Location Chr4 : 13894694-13900256 : positive

Gene Family Information

  • ID HOM05D000590
  • #Genes/#Species 945/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G27910.1
  • symbol SDG16
  • Alias ATX4
  • uniprot Q9SUE7

Descriptions

  • Description SET domain protein 16
  • Computational description SET domain protein 16 (SDG16); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: SET domain group 29 (TAIR:AT5G53430.1); Has 6853 Blast hits to 6701 proteins in 480 species: Archae - 2; Bacteria - 423; Metazoa - 3089; Fungi - 828; Plants - 1148; Viruses - 0; Other Eukaryotes - 1363 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051571
IGI
Gene Ontologypositive regulation of histone H3-K4 methylation1
GO:0034968
IEA
GOA Databasehistone lysine methylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0032259
IEA
GOA Databasemethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018024
IEA
GOA Databasehistone-lysine N-methyltransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR000313 PWWP domain
IPR001965 Zinc finger, PHD-type
IPR001214 SET domain
IPR011011 Zinc finger, FYVE/PHD-type
IPR042011 ATX3/4/5, PHD domain
IPR041955 ATX3/4/5, ePHD domain
IPR019787 Zinc finger, PHD-finger
IPR003616 Post-SET domain
Mapman id Description
12.3.3.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-III histone methyltransferase (Trithorax)