Gene: AT4G24790
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G24790
- Transcript Identifier AT4G24790.2
- Gene Type Coding gene
- Location Chr4 : 12778222-12781345 : positive
Gene Family Information
- ID HOM05D001195
- #Genes/#Species 523/97
- Phylogenetic origin
- ID ORTHO05D001138
- #Genes/#Species 477/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G24790.2
- uniprot F4JRP8
Descriptions
- Description AAA-type ATPase family protein
- Computational description AAA-type ATPase family protein; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Computational description AAA-type ATPase family protein; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IBA | Gene Ontology | DNA repair | 1 |
| GO:0006260 | IEA | Gene Ontology | DNA replication | |
| GO:0006260 | IEA | InterPro | DNA replication | |
| GO:0071897 | IEA | GOA Database | DNA biosynthetic process | |
| GO:0006261 | IBA | Gene Ontology | DNA-dependent DNA replication | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003887 | IEA | Gene Ontology | DNA-directed DNA polymerase activity | |
| GO:0003887 | IEA | InterPro | DNA-directed DNA polymerase activity | |
| GO:0003677 | IEA | Gene Ontology | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003689 | IBA | Gene Ontology | DNA clamp loader activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009360 | IEA | Gene Ontology | DNA polymerase III complex | |
| GO:0009360 | IEA | InterPro | DNA polymerase III complex | |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
| GO:0005663 | IBA | Gene Ontology | DNA replication factor C complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR008921 | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
| IPR012763 | DNA polymerase III, subunit gamma/ tau, N-terminal |
| IPR045085 | DNA polymerase III, subunit gamma/tau, helical lid domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |