Gene: AT4G24780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G24780
  • Transcript Identifier AT4G24780.1
  • Gene Type Coding gene
  • Location Chr4 : 12770631-12772227 : negative

Gene Family Information

  • ID HOM05D000131
  • #Genes/#Species 2694/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G24780.1
  • uniprot Q9C5M8

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G63180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045490
IEA
Gene Ontologypectin catabolic process
GO:0009624
IMP
Gene Ontologyresponse to nematode1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
GOA Databaselyase activity
GO:0016829
ISS
Gene Ontologylyase activity
GO:0030570
IEA
Gene Ontologypectate lyase activity
GO:0030570
IEA
InterPropectate lyase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005829
HDA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012334 Pectin lyase fold
IPR011050 Pectin lyase fold/virulence factor
IPR045032 Pectin lyase family
IPR002022 Pectate lyase
IPR018082 AmbAllergen
Mapman id Description
21.3.5.2 Cell wall organisation.pectin.modification and degradation.pectate lyase