Gene: AT4G22745

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G22745
  • Transcript Identifier AT4G22745.1
  • Gene Type Coding gene
  • Location Chr4 : 11947421-11948514 : negative

Gene Family Information

  • ID HOM05D001776
  • #Genes/#Species 367/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G22745.1
  • symbol MBD1
  • uniprot Q5XEN5

Descriptions

  • Description methyl-CPG-binding domain 1
  • Computational description methyl-CPG-binding domain 1 (MBD1); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 113 Blast hits to 113 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0008327
ISS
Gene Ontologymethyl-CpG binding1
GO:0051747
IDA
Gene Ontologycytosine C-5 DNA demethylase activity1
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001739 Methyl-CpG DNA binding
IPR011124 Zinc finger, CW-type
IPR016177 DNA-binding domain superfamily
Mapman id Description
12.5.4.1 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD1-4/12)