Gene: AT4G22745
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G22745
- Transcript Identifier AT4G22745.1
- Gene Type Coding gene
- Location Chr4 : 11947421-11948514 : negative
Gene Family Information
- ID HOM05D001776
- #Genes/#Species 367/98
- Phylogenetic origin
- ID ORTHO05D001771
- #Genes/#Species 358/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G22745.1
- symbol MBD1
- uniprot Q5XEN5
Descriptions
- Description methyl-CPG-binding domain 1
- Computational description methyl-CPG-binding domain 1 (MBD1); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 113 Blast hits to 113 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0008327 | ISS | Gene Ontology | methyl-CpG binding | 1 |
GO:0051747 | IDA | Gene Ontology | cytosine C-5 DNA demethylase activity | 1 |
GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
GO:0046872 | IEA | GOA Database | metal ion binding | |
GO:0003677 | IEA | GOA Database | DNA binding | |
GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009507 | ISM | Gene Ontology | chloroplast | |
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | IDA | Gene Ontology | nucleus | 3 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
12.5.4.1 | Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD1-4/12) |