Gene: AT4G20860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G20860
  • Transcript Identifier AT4G20860.1
  • Gene Type Coding gene
  • Location Chr4 : 11172726-11174318 : positive

Gene Family Information

  • ID HOM05D000128
  • #Genes/#Species 2706/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G20860.1
  • uniprot Q9SUC6

Descriptions

  • Description FAD-binding Berberine family protein
  • Computational description FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44360.1); Has 5055 Blast hits to 4866 proteins in 819 species: Archae - 58; Bacteria - 2286; Metazoa - 6; Fungi - 1739; Plants - 670; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009753
IEP
Gene Ontologyresponse to jasmonic acid1
GO:0010729
IMP
Gene Ontologypositive regulation of hydrogen peroxide biosynthetic process2
GO:0071456
HEP
Gene Ontologycellular response to hypoxia3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071949
IEA
Gene OntologyFAD binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0050660
IEA
GOA Databaseflavin adenine dinucleotide binding
GO:0050660
IEA
InterProflavin adenine dinucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009505
IDA
Gene Ontologyplant-type cell wall4
GO:0005618
IEA
GOA Databasecell wall
GO:0005829
IDA
GOA Databasecytosol
GO:0005576
IEA
GOA Databaseextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036318 FAD-binding, type PCMH-like superfamily
IPR016167 FAD-binding, type PCMH, subdomain 1
IPR006094 FAD linked oxidase, N-terminal
IPR012951 Berberine/berberine-like
IPR016169 FAD-binding, type PCMH, subdomain 2
Mapman id Description
50.1.1 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor