Gene: AT4G17730

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G17730
  • Transcript Identifier AT4G17730.2
  • Gene Type Coding gene
  • Location Chr4 : 9865351-9866717 : positive

Gene Family Information

  • ID HOM05D001378
  • #Genes/#Species 454/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G17730.2
  • symbol SYP23
  • Alias ATSYP23
  • full_name syntaxin of plants 23
  • uniprot O04378

Descriptions

  • Description syntaxin of plants 23
  • Computational description syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1783 Blast hits to 1783 proteins in 244 species: Archae - 0; Bacteria - 6; Metazoa - 845; Fungi - 276; Plants - 461; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
Gene Ontologyvesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006906
IBA
Gene Ontologyvesicle fusion1
GO:0006886
IBA
TAS, IEA
Gene Ontologyintracellular protein transport1 2
GO:0048278
IBA
Gene Ontologyvesicle docking1
GO:0019048
IDA
Gene Ontologymodulation by virus of host process3
GO:0009597
IDA
Gene Ontologydetection of virus3
GO:0061025
TAS
Gene Ontologymembrane fusion2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000149
IBA
Gene OntologySNARE binding1
GO:0005484
IBA
TAS, IEA
Gene OntologySNAP receptor activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IBA
Gene Ontologyintegral component of membrane1
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0031201
IBA
Gene OntologySNARE complex1
GO:0012505
IBA
Gene Ontologyendomembrane system1
GO:0005829
IDA
Gene Ontologycytosol3
GO:0000325
HDA
Gene Ontologyplant-type vacuole4
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006011 Syntaxin, N-terminal domain
IPR010989 SNARE
IPR000727 Target SNARE coiled-coil homology domain
Mapman id Description
22.3.5.1.1.2 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qa-type SNARE components.SYP2-group component