Gene: AT4G16990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G16990
  • Transcript Identifier AT4G16990.2
  • Gene Type Coding gene
  • Location Chr4 : 9560155-9565225 : positive

Gene Family Information

  • ID HOM05D000005
  • #Genes/#Species 11550/84
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G16990.2
  • symbol RLM3
  • full_name RESISTANCE TO LEPTOSPHAERIA MACULANS 3
  • uniprot Q9FT77

Descriptions

  • Description disease resistance protein (TIR-NBS class)
  • Computational description RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6513 Blast hits to 6293 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6507; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Computational description RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6697 Blast hits to 6313 proteins in 180 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050832
IMP
Gene Ontologydefense response to fungus1
GO:0007165
IEA
Gene Ontologysignal transduction
GO:0007165
IEA
InterProsignal transduction
GO:0006952
IEA
Gene Ontologydefense response
GO:0006952
IEA
InterProdefense response
GO:2000071
IMP
Gene Ontologyregulation of defense response by callose deposition1
GO:0009861
IMP
Gene Ontologyjasmonic acid and ethylene-dependent systemic resistance1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043531
IEA
Gene OntologyADP binding
GO:0043531
IEA
InterProADP binding
GO:0003953
IEA
Gene OntologyNAD+ nucleosidase activity
GO:0003953
IEA
InterProNAD+ nucleosidase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0061809
IEA
Gene OntologyNAD+ nucleotidase, cyclic ADP-ribose generating
GO:0050135
IEA
Gene OntologyNAD(P)+ nucleosidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
HDA
Gene Ontologycytosol3
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044974 Disease resistance protein, plants
IPR042197 Apoptotic protease-activating factors, helical domain
IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000157 Toll/interleukin-1 receptor homology (TIR) domain
IPR013591 Brevis radix (BRX) domain
IPR002182 NB-ARC
Mapman id Description
26.9.2.1.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.effector receptor (NLR)