Gene: AT4G16260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G16260
  • Transcript Identifier AT4G16260.2
  • Gene Type Coding gene
  • Location Chr4 : 9200180-9201245 : negative

Gene Family Information

  • ID HOM05D000020
  • #Genes/#Species 6649/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G16260.2
  • uniprot Q8VZJ2

Descriptions

  • Description Glycosyl hydrolase superfamily protein
  • Computational description Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0006952
IEA
GOA Databasedefense response
GO:0002215
IMP
Gene Ontologydefense response to nematode1
GO:0050832
IDA
Gene Ontologydefense response to fungus2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
GOA Databasehydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0042973
IEA
Gene Ontologyglucan endo-1,3-beta-D-glucosidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005618
IDA
GOA Databasecell wall
GO:0005618
HDA
Gene Ontologycell wall3
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0046658
IBA
Gene Ontologyanchored component of plasma membrane4
GO:0099503
HDA
Gene Ontologysecretory vesicle5
GO:0000325
HDA
Gene Ontologyplant-type vacuole6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044965 Glycoside hydrolase family 17, plant
IPR017853 Glycoside hydrolase superfamily
IPR000490 Glycoside hydrolase family 17
Mapman id Description
50.3.2 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase