Gene: AT4G15417

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G15417
  • Transcript Identifier AT4G15417.2
  • Gene Type Coding gene
  • Location Chr4 : 8821684-8822991 : positive

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G15417.2
  • symbol RTL1
  • Alias ATRTL1,RNAse II-like 1
  • uniprot F4JK37

Descriptions

  • Description RNAse II-like 1
  • Computational description RNAse II-like 1 (RTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 2 (TAIR:AT3G20420.1); Has 6428 Blast hits to 6386 proteins in 2315 species: Archae - 23; Bacteria - 4325; Metazoa - 271; Fungi - 247; Plants - 236; Viruses - 14; Other Eukaryotes - 1312 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0030422
IBA
Gene Ontologyproduction of siRNA involved in RNA interference1
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004525
IBA
IEA
Gene Ontologyribonuclease III activity1
GO:0004525
IEA
InterProribonuclease III activity
GO:0003723
IBA
Gene OntologyRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR000999 Ribonuclease III domain
Mapman id Description
35.1 not assigned.annotated