Gene: AT4G11850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G11850
  • Transcript Identifier AT4G11850.1
  • Gene Type Coding gene
  • Location Chr4 : 7129352-7132937 : negative

Gene Family Information

  • ID HOM05D000315
  • #Genes/#Species 1462/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G11850.1
  • symbol PLDGAMMA1
  • Alias MEE54,maternal effect embryo arrest 54
  • uniprot Q9T053

Descriptions

  • Description phospholipase D gamma 1
  • Computational description phospholipase D gamma 1 (PLDGAMMA1); FUNCTIONS IN: phospholipase D activity, protein binding, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: defense response to bacterium, incompatible interaction, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 3 (TAIR:AT4G11840.1); Has 2106 Blast hits to 1666 proteins in 402 species: Archae - 0; Bacteria - 529; Metazoa - 440; Fungi - 441; Plants - 536; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046470
IEA
Gene Ontologyphosphatidylcholine metabolic process
GO:0046470
IEA
InterProphosphatidylcholine metabolic process
GO:0016042
IEA
GOA Databaselipid catabolic process
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0009395
IBA
Gene Ontologyphospholipid catabolic process1
GO:0045087
IDA
Gene Ontologyinnate immune response2
GO:0010044
IMP
Gene Ontologyresponse to aluminum ion3
GO:0006979
IMP
Gene Ontologyresponse to oxidative stress3
GO:0006643
IMP
Gene Ontologymembrane lipid metabolic process3
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy4
GO:0042742
IGI
Gene Ontologydefense response to bacterium5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004630
IEA
GOA Databasephospholipase D activity
GO:0004630
IDA
ISS, IBA
Gene Ontologyphospholipase D activity1 6
GO:0004630
IEA
InterProphospholipase D activity
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0005509
IEA
InterProcalcium ion binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005546
IDA
Gene Ontologyphosphatidylinositol-4,5-bisphosphate binding6
GO:0005515
IPI
Gene Ontologyprotein binding7
GO:0070290
IEA
Gene OntologyN-acylphosphatidylethanolamine-specific phospholipase D activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005886
IDA, HDA
IBA
Gene Ontologyplasma membrane1 2 8
GO:0005829
HDA
Gene Ontologycytosol9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001736 Phospholipase D/Transphosphatidylase
IPR024632 Phospholipase D, C-terminal
IPR015679 Phospholipase D family
IPR011402 Phospholipase D, plant
IPR035892 C2 domain superfamily
IPR000008 C2 domain
Mapman id Description
5.7.2.4.2 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase D activities.phospholipase D (PLD-beta/gamma)